# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1s9rA 410 0.4137 d.126.1.4 98758 2abkA 211 0.6460 a.96.1.1 18743 1ornA 226 0.9622 a.96.1.1 87342 2abk 211 1.260 1lxyA 409 1.538 d.126.1.4 91154 1mun 225 3.077 1volA 204 3.707 a.74.1.2,a.74.1.2 18370,18371 1munA 225 6.905 a.96.1.2 18744 2qguA 211 10.56 1keaA 221 10.91 a.96.1.2 68491 1rxxA 421 12.70 d.126.1.4 98061 3cjpA 272 13.07 3c4hA 357 15.32 2bl0B 145 16.22 1g3nC 257 16.57 a.74.1.1,a.74.1.1 18366,18367 1jpnA 296 19.49 a.24.13.1,c.37.1.10 67039,67040 1jxhA 288 19.85 c.72.1.2 67415 1c9bA 207 19.97 a.74.1.2,a.74.1.2 18372,18373 1ub0A 258 20.64 c.72.1.2 88394 1ps1A 337 20.84 a.128.1.4 19450 1hr6B 443 21.49 d.185.1.1,d.185.1.1 61166,61167 2yskA 145 22.26 1k75A 434 22.78 c.82.1.2 68253 2yxtA 312 25.00 2j49A 148 25.27 1aisB 200 25.75 a.74.1.2,a.74.1.2 18384,18385 1zavA 180 27.96 2ptmA 198 31.01 1hr6A 475 32.12 d.185.1.1,d.185.1.1 61164,61165 2og2A 359 32.23 1a4iA 301 32.89 c.2.1.7,c.58.1.2 30278,33926 2o5gA 148 33.56 2ew2A 316 34.06 1nrwA 288 34.14 c.108.1.10 86128 1adjA 421 34.96 c.51.1.1,d.104.1.1 33188,40737 2i39A 137 36.40 1ls1A 295 36.60 a.24.13.1,c.37.1.10 78170,78171 1v4eA 299 37.16 a.128.1.1 100296 2sasA 185 38.03 a.39.1.5 17258 2sas 185 38.23 1lhpA 312 38.42 c.72.1.5 77960 1yzfA 195 38.97 c.23.10.5 124275 2atsA 292 40.47 c.1.10.1 127306 2zivB 351 41.96 2aaoA 166 43.48 1xl7A 612 44.10 c.43.1.3,c.43.1.3 115438,115439 1u5tB 169 45.18 a.4.5.54,a.4.5.54 107686,107687 2pa9A 357 45.40 1f0yA 302 45.40 a.100.1.3,c.2.1.6 18793,30197 1ng1 294 47.99 1qumA 285 48.63 c.1.15.1 29393 1b48A 221 49.33 a.45.1.1,c.47.1.5 17703,32997 1kaeA 434 49.42 c.82.1.2 72247 2r2iA 198 50.16 1d3uB 201 50.60 a.74.1.2,a.74.1.2 18386,18387 1zeeA 403 51.57 a.266.1.2 124981 2qgsA 225 52.16 1v9mA 323 53.91 f.40.1.1 100543 2ogiA 196 54.51 2c43A 323 54.77 1c0aA 585 55.28 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 2ho1A 252 55.57 1uby 367 56.86 1efyA 350 60.52 a.41.1.1,d.166.1.2 17413,42275 1bu2A 229 62.13 a.74.1.1,a.74.1.1 18360,18361 1k7jA 206 62.40 d.115.1.1 72103 1b0aA 288 63.79 c.2.1.7,c.58.1.2 30286,33934 1m15A 357 65.21 a.83.1.1,d.128.1.2 78368,78369 1e96B 203 66.73 a.118.8.1 19211 3b9qA 302 67.24 2hdhA 293 67.31 a.100.1.3,c.2.1.6 18795,30199 1cuk 203 67.96 1qlsA 99 69.83 a.39.1.2 17185 2gviA 204 71.12 2vlaA 285 71.62 1k3pA 426 72.58 a.103.1.1 77237 1rztA 331 73.09 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1ojqA 212 73.46 d.166.1.1 93146 2pv4A 145 75.31 1kk9A 221 76.56 d.115.1.1 77432 1uwkA 557 77.44 e.51.1.1 108065 2a9gA 418 77.85 d.126.1.4 126435 1dn1A 594 77.98 e.25.1.1 43357 1pvaA 110 78.70 a.39.1.4 17207 1bif 469 79.99 2vglA 621 82.11 2obhA 143 83.26 1dhpA 292 84.04 c.1.10.1 29097 1vmaA 306 85.05 a.24.13.1,c.37.1.10 108887,108888 2jg1A 330 85.26 1k77A 260 85.60 c.1.15.5 72096 1el4A 195 85.92 a.39.1.5 59453 2ewtA 71 87.22 1fukA 165 87.68 c.37.1.19 32409 1cukA 203 87.83 a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2zfyA 234 88.00 1rec 201 88.15