# List of top-scoring protein chains for T0443.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v9uA	132	12.58		
1yxaA	398	16.10		
2q7sA	290	18.21		
2amxA	376	21.13	c.1.9.1	127024
1ihoA	283	36.03	c.26.1.4	62390
1ub4A	110	36.33	b.34.6.2	88399
2ip2A	334	39.51		
2bg9C	369	39.79		
2qt3A	403	41.03		
1qjbA	245	48.51	a.118.7.1	19202
2o02A	230	49.23		
2c1nA	258	49.93	a.118.7.1	129640
2j1qA	357	54.52		
2dm6A	333	55.19	b.35.1.2,c.2.1.1	131567,131568
2c63A	247	58.50		
1a52A	258	61.90	a.123.1.1	19296
2iogA	246	62.42		
1yjeA	264	64.29		
1xpcA	248	66.37	a.123.1.1	115738
1x7rA	245	68.52		
1gwrA	245	70.78	a.123.1.1	76368
1g50A	247	72.36	a.123.1.1	65149
1iurA	88	73.44	a.2.3.1	90704
1gwqA	248	74.49	a.123.1.1	76366
1qkuA	250	74.81	a.123.1.1	19306
2iokA	254	74.91		
2ouzA	253	74.94	a.123.1.1	139378
2b1zA	257	78.29		
2qseA	258	78.88		
1errA	253	79.68	a.123.1.1	19298
3ertA	261	81.80	a.123.1.1	19292
2dpyA	438	85.25		
1l2iA	261	89.65	a.123.1.1	73503