# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	2.364		
2ia0A	171	7.969		
2e1nA	138	8.646		
2dbbA	151	9.257		
2cfxA	144	13.10	a.4.5.32,d.58.4.2	130395,130396
2ivmA	150	13.33		
2qz8A	149	13.34		
2cg4A	152	14.41	a.4.5.32,d.58.4.2	130417,130418
2p5vA	162	15.28		
1j3mA	129	16.58	d.129.7.1	103836
3c4hA	357	17.05		
2px6A	316	17.85		
1rjdA	334	18.03	c.66.1.37	97558
2b5eA	504	19.66	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2cyyA	151	23.20	a.4.5.32,d.58.4.2	131028,131029
1mzbA	136	25.14	a.4.5.42	91497
1opcA	110	25.52	a.4.6.1	16231
2fe3A	145	27.04		
1gxqA	106	27.80	a.4.6.1	70721
2vglS	142	29.85		
1opc	110	32.06		
2a1hA	365	32.57	e.17.1.1	125997
2e7xA	150	32.96		
2pn6A	150	34.35		
3b73A	111	35.45		
1wojA	214	41.03		
1rypJ	204	42.59	d.153.1.4	41878
1q3eA	207	42.68	b.82.3.2	95669
2ixaA	444	44.40		
1q9uA	130	44.91	d.129.7.1	96314
1xzoA	174	46.13	c.47.1.10	122474
1g0sA	209	47.53	d.113.1.1	60187
1kgsA	225	48.93	a.4.6.1,c.23.1.1	68596,68597
2h30A	164	49.05		
2gqqA	163	54.38		
1grj	158	57.08		
2fu4A	83	58.27		
2nr3A	183	60.47		
2hwvA	121	61.29		
1iruK	201	62.83	d.153.1.4	71362
2gfsA	372	63.91	d.144.1.7	135109
1mqeA	207	64.11	d.113.1.1	91394
2o5hA	136	64.13		
1pg4A	652	64.24	e.23.1.1	88067
2itmA	484	65.91		
2dqlA	115	65.92		
2jayA	291	66.89		
1r1uA	106	67.62	a.4.5.5	104771
3c57A	95	68.61		
1t5jA	313	69.16	a.209.1.1	99125
1fseA	74	69.52	a.4.6.2	60000
1yarH	217	71.32	d.153.1.4	122844
2p0vA	489	71.35		
2cl5A	221	71.38	c.66.1.1	130570
2d1vA	108	72.04		
2yzvA	303	72.15		
2oo9A	46	73.02		
3bz6A	183	73.37		
1a8yA	367	74.39	c.47.1.3,c.47.1.3,c.47.1.3	32781,32782,32783
1uocA	289	75.40	c.55.3.9	99686
1ctt	294	78.13		
1nofA	383	78.74	b.71.1.2,c.1.8.3	92020,92021
2eveA	157	78.75	b.122.1.8	132427
2q9oA	559	80.90		
2r7dA	469	84.03		
1sw5B	275	85.19	c.94.1.1	106070
1xo0A	324	86.80	a.60.9.1,d.163.1.1	115674,115675
2c1vA	338	88.12