# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	2.478		
2e1nA	138	9.084		
2px6A	316	11.42		
3c4hA	357	12.94		
2ixaA	444	13.34		
1rjdA	334	13.66	c.66.1.37	97558
2ia0A	171	17.12		
2p5vA	162	17.62		
2b5eA	504	18.34	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
1j3mA	129	19.88	d.129.7.1	103836
2vglS	142	21.30		
3b73A	111	22.96		
2cfxA	144	24.58	a.4.5.32,d.58.4.2	130395,130396
2dbbA	151	26.07		
2ivmA	150	31.17		
2a1hA	365	31.85	e.17.1.1	125997
2qz8A	149	32.21		
1mzbA	136	32.42	a.4.5.42	91497
1g0sA	209	36.35	d.113.1.1	60187
1q9uA	130	38.09	d.129.7.1	96314
2cyyA	151	38.95	a.4.5.32,d.58.4.2	131028,131029
3ch3X	265	39.62		
1xb4A	202	39.65	a.4.5.54,a.4.5.54	121832,121833
1uocA	289	42.52	c.55.3.9	99686
1gxqA	106	44.78	a.4.6.1	70721
2pn6A	150	46.09		
1xzoA	174	47.70	c.47.1.10	122474
2yzvA	303	48.52		
2e7xA	150	49.80		
2fe3A	145	50.54		
1m15A	357	52.51	a.83.1.1,d.128.1.2	78368,78369
1opcA	110	53.54	a.4.6.1	16231
1qwgA	251	57.15	c.1.27.1	96473
1iruK	201	57.53	d.153.1.4	71362
2hwvA	121	58.52		
1r1uA	106	60.30	a.4.5.5	104771
1w63Q	158	60.44	i.23.1.1	109208
1mqeA	207	60.63	d.113.1.1	91394
2eveA	157	60.82	b.122.1.8	132427
2dqlA	115	60.98		
2fu4A	83	64.58		
1u5tB	169	65.23	a.4.5.54,a.4.5.54	107686,107687
1opc	110	67.15		
1n40A	396	67.60	a.104.1.1	79977
2z3yA	662	67.80		
1rypJ	204	68.76	d.153.1.4	41878
2cg4A	152	72.76	a.4.5.32,d.58.4.2	130417,130418
1t5jA	313	73.48	a.209.1.1	99125
1fseA	74	73.98	a.4.6.2	60000
2icjA	233	77.45		
1pg4A	652	78.68	e.23.1.1	88067
1mrzA	293	78.80	b.43.5.1,c.26.1.3	91452,91453
3bz6A	183	82.62		
1mdbA	539	83.38	e.23.1.1	79008
1wojA	214	85.25		
1z15A	344	85.52		
2d1vA	108	86.62		
1uirA	314	87.93	c.66.1.17	99429
2cwcA	303	88.68		
2itmA	484	88.87		
3c57A	95	89.90