# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia0A	171	5.802		
2e1nA	138	6.623		
2cg4A	152	7.796	a.4.5.32,d.58.4.2	130417,130418
2cfxA	144	9.080	a.4.5.32,d.58.4.2	130395,130396
2p5vA	162	11.42		
2dbbA	151	11.44		
2qz8A	149	11.60		
2cyyA	151	11.75	a.4.5.32,d.58.4.2	131028,131029
2coiA	386	14.00		
3c4hA	357	14.06		
2ivmA	150	15.07		
1mzbA	136	16.69	a.4.5.42	91497
1sw5B	275	18.11	c.94.1.1	106070
2gtqA	867	20.21		
1gxqA	106	22.00	a.4.6.1	70721
1rjdA	334	22.06	c.66.1.37	97558
1g0sA	209	22.98	d.113.1.1	60187
1uocA	289	23.83	c.55.3.9	99686
1sw5A	275	23.87	c.94.1.1	106069
1x8vA	455	24.18	a.104.1.1	114968
1q3eA	207	24.58	b.82.3.2	95669
2e7xA	150	24.84		
3ezmA	101	25.66	b.89.1.1	28395
1j3mA	129	28.44	d.129.7.1	103836
2nr3A	183	28.98		
2dq6A	870	29.01		
1kgsA	225	29.86	a.4.6.1,c.23.1.1	68596,68597
2pn6A	150	31.14		
1r1uA	106	31.41	a.4.5.5	104771
2bce	581	33.57		
3b73A	111	34.45		
2yzvA	303	37.61		
2fu4A	83	37.65		
1ustA	93	37.85	a.4.5.13	99884
1qwgA	251	39.22	c.1.27.1	96473
1nofA	383	39.77	b.71.1.2,c.1.8.3	92020,92021
2f2eA	146	42.42	a.4.5.69	132808
2a1hA	365	42.86	e.17.1.1	125997
1xl7A	612	43.49	c.43.1.3,c.43.1.3	115438,115439
2f57A	317	43.64		
1xzoA	174	44.15	c.47.1.10	122474
2i7pA	362	44.81		
2gqqA	163	45.97		
3bz6A	183	46.85		
1grj	158	48.40		
1wojA	214	49.22		
1q9uA	130	49.97	d.129.7.1	96314
1vd5A	377	50.72	a.102.1.7	108518
1iruK	201	53.20	d.153.1.4	71362
2j0iA	303	54.05		
1z15A	344	54.34		
2dqlA	115	55.26		
2px6A	316	56.18		
1fseA	74	56.43	a.4.6.2	60000
1q06A	135	58.81	a.6.1.3	95493
1jcfA	344	59.16	c.55.1.1,c.55.1.1	62878,62879
1xb4A	202	59.50	a.4.5.54,a.4.5.54	121832,121833
2g8yA	385	60.03		
1r1tA	122	60.43	a.4.5.5	104769
2fe3A	145	61.73		
1mdbA	539	62.93	e.23.1.1	79008
1p2fA	220	63.85	a.4.6.1,c.23.1.1	87720,87721
1i4jA	110	66.96	d.55.1.1	76734
2i5tA	188	68.32		
2btzA	394	68.88		
1rdqE	350	70.35	d.144.1.7	97314
1zu0A	529	70.36		
3c57A	95	70.62		
2hwvA	121	71.24		
1viuA	203	71.31	d.113.1.1	100771
3cloA	258	74.14		
2qklA	127	74.90		
2hlsA	243	75.92		
2hvqA	335	76.20		
2icjA	233	78.23		
1t5jA	313	79.20	a.209.1.1	99125
2p0vA	489	80.24		
2pwoA	146	82.07		
2b9hA	353	82.44		
1n40A	396	83.11	a.104.1.1	79977
2fa5A	162	85.39		
1mqeA	207	87.06	d.113.1.1	91394
2oo9A	46	87.07		
2ixaA	444	87.34		
2eshA	118	88.49	a.4.5.61	132325
1sw2A	275	88.88	c.94.1.1	106064
2rjbA	455	89.64