# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	5.500		
2e1nA	138	7.635		
1rjdA	334	8.235	c.66.1.37	97558
2ia0A	171	11.74		
2dbbA	151	15.45		
2ivmA	150	16.48		
1mzbA	136	18.56	a.4.5.42	91497
2fu4A	83	19.36		
2fe3A	145	20.69		
2cg4A	152	24.98	a.4.5.32,d.58.4.2	130417,130418
1gxqA	106	26.02	a.4.6.1	70721
2qwwA	154	26.96		
2qz8A	149	27.37		
1opcA	110	28.73	a.4.6.1	16231
2a1hA	365	30.54	e.17.1.1	125997
1uocA	289	31.74	c.55.3.9	99686
2p5vA	162	31.83		
1r1uA	106	32.72	a.4.5.5	104771
1m15A	357	33.58	a.83.1.1,d.128.1.2	78368,78369
2cyyA	151	34.05	a.4.5.32,d.58.4.2	131028,131029
2cfxA	144	35.00	a.4.5.32,d.58.4.2	130395,130396
1opc	110	36.56		
2e7xA	150	41.12		
1iruK	201	43.37	d.153.1.4	71362
2px6A	316	44.78		
3b73A	111	47.85		
3bczA	293	50.33		
2a4vA	159	50.52	c.47.1.10	126163
1p2fA	220	51.25	a.4.6.1,c.23.1.1	87720,87721
2h30A	164	52.12		
3c4hA	357	53.24		
1qwgA	251	56.38	c.1.27.1	96473
1xzoA	174	56.45	c.47.1.10	122474
2vglS	142	58.10		
2fa5A	162	60.27		
1nuyA	337	62.72	e.7.1.1	86213
1j3mA	129	62.89	d.129.7.1	103836
1rypJ	204	63.58	d.153.1.4	41878
2dqlA	115	64.57		
1xb4A	202	67.16	a.4.5.54,a.4.5.54	121832,121833
2ixaA	444	67.93		
1uirA	314	71.79	c.66.1.17	99429
1q06A	135	73.06	a.6.1.3	95493
1auiB	169	73.68	a.39.1.5	17325
2p0vA	489	74.00		
2hfsA	332	78.25		
3c57A	95	79.70		
1qh4A	380	80.24	a.83.1.1,d.128.1.2	18462,41197
2dbyA	368	84.71		
3b8bA	292	84.87		
2pn6A	150	84.89		
1xo0A	324	86.93	a.60.9.1,d.163.1.1	115674,115675
1kgsA	225	87.35	a.4.6.1,c.23.1.1	68596,68597
1g0sA	209	88.09	d.113.1.1	60187
2r7dA	469	89.79