# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	7.490		
2e1nA	138	10.83		
2ia0A	171	12.21		
1rjdA	334	12.54	c.66.1.37	97558
1mzbA	136	16.11	a.4.5.42	91497
2ivmA	150	16.89		
2qwwA	154	18.47		
2dbbA	151	19.32		
2fu4A	83	20.94		
1opcA	110	23.80	a.4.6.1	16231
2fe3A	145	24.44		
2cg4A	152	27.47	a.4.5.32,d.58.4.2	130417,130418
2qz8A	149	27.81		
2px6A	316	30.00		
1gxqA	106	30.01	a.4.6.1	70721
1opc	110	32.10		
2p5vA	162	36.40		
2cyyA	151	36.45	a.4.5.32,d.58.4.2	131028,131029
2cfxA	144	36.97	a.4.5.32,d.58.4.2	130395,130396
1n40A	396	37.63	a.104.1.1	79977
1uocA	289	40.15	c.55.3.9	99686
1iruK	201	40.19	d.153.1.4	71362
2fa5A	162	40.79		
1qwgA	251	42.36	c.1.27.1	96473
3bczA	293	42.44		
3b73A	111	44.78		
1rypJ	204	45.39	d.153.1.4	41878
2a1hA	365	46.72	e.17.1.1	125997
1xo0A	324	48.71	a.60.9.1,d.163.1.1	115674,115675
1r1uA	106	49.92	a.4.5.5	104771
2e7xA	150	50.50		
2vglS	142	56.55		
1p2fA	220	56.88	a.4.6.1,c.23.1.1	87720,87721
3c4hA	357	58.41		
2rhwA	283	59.63		
1m15A	357	62.57	a.83.1.1,d.128.1.2	78368,78369
2a4vA	159	62.90	c.47.1.10	126163
2bce	581	63.48		
1j3mA	129	64.12	d.129.7.1	103836
1j1iA	296	64.83	c.69.1.10	83977
1xb4A	202	65.28	a.4.5.54,a.4.5.54	121832,121833
2ixaA	444	65.52		
1xzoA	174	67.74	c.47.1.10	122474
2yzvA	303	68.41		
2gtqA	867	68.62		
1auiB	169	70.63	a.39.1.5	17325
1fx7A	230	73.56	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1uirA	314	74.62	c.66.1.17	99429
1xl7A	612	75.10	c.43.1.3,c.43.1.3	115438,115439
2hfsA	332	75.27		
1zoiA	276	75.33		
2h30A	164	77.12		
1q06A	135	83.32	a.6.1.3	95493
2dqlA	115	83.77		
2ejnA	153	85.08	a.101.1.1,a.101.1.1	132279,132280