# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	7.554		
2e1nA	138	8.130		
1rjdA	334	9.124	c.66.1.37	97558
2ia0A	171	15.31		
2dbbA	151	17.59		
2ivmA	150	20.02		
1mzbA	136	20.87	a.4.5.42	91497
2fu4A	83	22.58		
2fe3A	145	25.70		
3bczA	293	26.26		
2qz8A	149	26.49		
2qwwA	154	27.91		
1opcA	110	28.04	a.4.6.1	16231
2cg4A	152	28.26	a.4.5.32,d.58.4.2	130417,130418
2cyyA	151	35.85	a.4.5.32,d.58.4.2	131028,131029
1gxqA	106	36.52	a.4.6.1	70721
2cfxA	144	36.61	a.4.5.32,d.58.4.2	130395,130396
1opc	110	36.83		
1uocA	289	36.83	c.55.3.9	99686
1qwgA	251	37.15	c.1.27.1	96473
2px6A	316	37.79		
2p5vA	162	37.90		
2hfsA	332	38.27		
1iruK	201	41.57	d.153.1.4	71362
1r1uA	106	45.59	a.4.5.5	104771
2vglS	142	45.93		
2a1hA	365	46.50	e.17.1.1	125997
2ixaA	444	46.95		
1m15A	357	47.28	a.83.1.1,d.128.1.2	78368,78369
2e7xA	150	47.31		
3b73A	111	48.19		
1rypJ	204	49.53	d.153.1.4	41878
1p2fA	220	54.54	a.4.6.1,c.23.1.1	87720,87721
2fa5A	162	63.48		
2h30A	164	65.64		
1n40A	396	65.65	a.104.1.1	79977
1xzoA	174	66.82	c.47.1.10	122474
1auiB	169	68.42	a.39.1.5	17325
1j3mA	129	68.43	d.129.7.1	103836
2bce	581	68.67		
1xb4A	202	68.70	a.4.5.54,a.4.5.54	121832,121833
2rhwA	283	68.80		
2hwvA	121	75.15		
2a4vA	159	76.51	c.47.1.10	126163
2gtqA	867	78.53		
3b8bA	292	78.68		
2yzvA	303	79.36		
2bvlA	543	80.09		
2b5eA	504	80.93	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2j0iA	303	85.45		
1rxwA	336	85.73	a.60.7.1,c.120.1.2	98059,98060
1kgsA	225	85.78	a.4.6.1,c.23.1.1	68596,68597
1zoiA	276	85.99		
1qbkB	890	86.79	a.118.1.1	19127
1q3eA	207	87.22	b.82.3.2	95669
1xo0A	324	87.42	a.60.9.1,d.163.1.1	115674,115675
2o5hA	136	88.15		
2d1vA	108	88.64