# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1t1uA 639 0.4500 c.43.1.3,c.43.1.3 119110,119111 2iw0A 254 6.473 c.6.2.3 137737 2e1nA 138 7.659 2oqgA 114 8.039 1r1uA 106 8.166 a.4.5.5 104771 2coiA 386 9.506 2cc0A 195 13.01 c.6.2.3 130209 1gxqA 106 13.61 a.4.6.1 70721 2p5vA 162 15.50 1xl7A 612 16.06 c.43.1.3,c.43.1.3 115438,115439 1r1tA 122 16.19 a.4.5.5 104769 2cg4A 152 17.93 a.4.5.32,d.58.4.2 130417,130418 2qz8A 149 19.92 2a9gA 418 20.20 d.126.1.4 126435 2dbbA 151 21.13 2eshA 118 22.35 a.4.5.61 132325 2ivmA 150 23.58 2ia0A 171 24.96 1nm8A 616 24.99 c.43.1.3,c.43.1.3 85872,85873 1xb4A 202 26.78 a.4.5.54,a.4.5.54 121832,121833 2cmgA 262 26.85 2cfxA 144 27.40 a.4.5.32,d.58.4.2 130395,130396 2ethA 154 29.88 a.4.5.28 132358 1mzbA 136 34.06 a.4.5.42 91497 3bsoA 510 35.27 2vfxA 206 35.52 2c1iA 431 39.06 c.6.2.3,d.341.1.1 129636,129637 2av4A 162 40.45 1uocA 289 41.73 c.55.3.9 99686 2p5iA 288 42.82 1ie9A 259 42.91 a.123.1.1 62318 2a1hA 365 43.88 e.17.1.1 125997 2pmuA 110 44.13 1u0tA 307 44.58 e.52.1.1 107567 1opc 110 45.58 1sw5A 275 45.62 c.94.1.1 106069 1mkyA 439 45.75 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2cyyA 151 46.62 a.4.5.32,d.58.4.2 131028,131029 2d1vA 108 46.89 2qc0A 373 46.89 2a4vA 159 47.29 c.47.1.10 126163 1opcA 110 47.76 a.4.6.1 16231 1sd4A 126 48.55 a.4.5.39 105428 2px6A 316 48.59 1ymtA 246 50.42 2cwcA 303 51.33 2e7xA 150 51.92 2hwvA 121 53.70 1je8A 82 53.73 a.4.6.2 77108 2gtqA 867 54.74 2eveA 157 55.30 b.122.1.8 132427 2nyxA 168 56.71 2nr3A 183 56.84 1tuaA 191 56.96 d.51.1.1,d.51.1.1 107321,107322 2aznA 219 57.13 c.71.1.2 127608 1uluA 261 57.29 c.2.1.2 113292 2dq6A 870 61.60 3c4hA 357 61.82 2hvqA 335 61.88 2nt0A 497 65.13 b.71.1.2,c.1.8.3 138561,138562 2dlxA 153 67.27 2ijlA 135 68.11 2o23A 265 70.16 c.2.1.2 138884 2fctA 313 71.20 b.82.2.9 133282 2biwA 490 71.49 2b5eA 504 71.64 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 3bz6A 183 73.81 2q9oA 559 74.01 2dqlA 115 74.95 2qwwA 154 75.10 1qh4A 380 75.50 a.83.1.1,d.128.1.2 18462,41197 1sw5B 275 75.98 c.94.1.1 106070 2pexA 153 77.22 2hq2A 354 77.41 e.62.1.1 136656 2p91A 285 77.83 1ustA 93 78.80 a.4.5.13 99884 2rhwA 283 79.85 2bd0A 244 81.49 c.2.1.2 128321 1fseA 74 81.62 a.4.6.2 60000 1m15A 357 82.20 a.83.1.1,d.128.1.2 78368,78369 2g9wA 138 84.81 2fu4A 83 86.21 2h30A 164 86.21 3b73A 111 87.61 2d1hA 109 89.65 a.4.5.50 131125 2gxgA 146 89.98