# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e1nA	138	4.048		
2ia0A	171	4.284		
2coiA	386	6.517		
2qz8A	149	6.945		
2ivmA	150	7.385		
2dbbA	151	7.663		
2p5vA	162	8.026		
2cfxA	144	9.945	a.4.5.32,d.58.4.2	130395,130396
2cg4A	152	13.84	a.4.5.32,d.58.4.2	130417,130418
2e7xA	150	16.38		
3b73A	111	18.06		
2cyyA	151	18.22	a.4.5.32,d.58.4.2	131028,131029
1j3mA	129	19.04	d.129.7.1	103836
2pn6A	150	24.09		
2ixaA	444	24.83		
1mzbA	136	26.35	a.4.5.42	91497
1uocA	289	27.14	c.55.3.9	99686
2b5eA	504	27.85	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
1m15A	357	29.38	a.83.1.1,d.128.1.2	78368,78369
2ds3A	761	30.36		
2p0vA	489	33.71		
1opc	110	34.72		
3c4hA	357	35.14		
1xb4A	202	36.28	a.4.5.54,a.4.5.54	121832,121833
1r1uA	106	37.22	a.4.5.5	104771
2a1hA	365	38.15	e.17.1.1	125997
1opcA	110	38.93	a.4.6.1	16231
2yzvA	303	46.38		
1sw5B	275	46.52	c.94.1.1	106070
1lqaA	346	48.26	c.1.7.1	84674
2h30A	164	49.12		
2hvqA	335	49.67		
1gxqA	106	52.43	a.4.6.1	70721
1qwgA	251	53.60	c.1.27.1	96473
2dqlA	115	53.75		
3bz6A	183	53.94		
2nr3A	183	54.31		
2px6A	316	56.96		
2vglS	142	59.50		
2oqgA	114	60.16		
2f2eA	146	60.46	a.4.5.69	132808
2gtqA	867	65.60		
1sw5A	275	69.05	c.94.1.1	106069
1q9uA	130	70.85	d.129.7.1	96314
2q9oA	559	73.56		
2itmA	484	78.69		
1n40A	396	82.25	a.104.1.1	79977
2oo9A	46	82.31		
2a4vA	159	82.63	c.47.1.10	126163
1t5jA	313	82.82	a.209.1.1	99125
1g0sA	209	85.56	d.113.1.1	60187
2fa5A	162	86.29		
1u6rA	380	86.81	a.83.1.1,d.128.1.2	119600,119601
1q3eA	207	86.87	b.82.3.2	95669
1xl7A	612	88.19	c.43.1.3,c.43.1.3	115438,115439
1xzoA	174	89.27	c.47.1.10	122474