# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dcfA	392	6.069		
2dq6A	870	6.658		
2r7dA	469	7.569		
2coiA	386	8.189		
1xo0A	324	9.97	a.60.9.1,d.163.1.1	115674,115675
2hr7A	486	10.35		
2e1nA	138	10.41		
2b5eA	504	11.30	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2yzvA	303	12.33		
2ia0A	171	12.54		
1m15A	357	12.97	a.83.1.1,d.128.1.2	78368,78369
3b34A	891	13.77		
1opcA	110	13.77	a.4.6.1	16231
2gl6A	392	14.01		
1ejxC	567	14.81	b.92.1.1,c.1.9.2	83184,83185
1p2fA	220	15.12	a.4.6.1,c.23.1.1	87720,87721
1hr6A	475	16.23	d.185.1.1,d.185.1.1	61164,61165
2cwcA	303	16.85		
2j9oA	298	17.68		
1vprA	374	20.90	b.60.1.7	120066
2dbbA	151	20.98		
2ivmA	150	21.71		
1tmxA	293	22.75		
2cg4A	152	22.97	a.4.5.32,d.58.4.2	130417,130418
2p5vA	162	23.63		
1j3mA	129	25.65	d.129.7.1	103836
1ldjA	760	26.42	a.4.5.34,a.118.17.1,e.40.1.1	73847,73848,73849
2cfxA	144	27.38	a.4.5.32,d.58.4.2	130395,130396
2j6gA	266	28.18		
1yaaA	412	29.72	c.67.1.1	34280
1di1A	300	33.27	a.128.1.4	19446
3b73A	111	33.47		
1xovA	326	33.73	b.34.11.4,c.56.5.6	122206,122207
1ig3A	263	33.91	b.82.6.1,c.100.1.1	62358,62359
1opc	110	34.00		
1rxwA	336	34.40	a.60.7.1,c.120.1.2	98059,98060
2ccmA	191	34.95		
2jayA	291	38.31		
2p3rA	510	38.72	c.55.1.4,c.55.1.4	139471,139472
1vqqA	646	40.35	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2e7xA	150	40.39		
3be7A	408	40.40		
1ym5A	300	40.84		
1tp6A	128	41.23	d.17.4.12	107184
2fvkA	559	43.20	b.92.1.3,c.1.9.6	134204,134205
1vbuA	328	43.66	c.1.8.3	119963
1in4A	334	43.77	a.4.5.11,c.37.1.20	62597,62598
1auiB	169	43.84	a.39.1.5	17325
2heuA	401	44.82		
1mzbA	136	44.83	a.4.5.42	91497
2r6fA	972	45.87		
2bv6A	142	46.23		
2cyyA	151	46.26	a.4.5.32,d.58.4.2	131028,131029
2fozA	347	46.38		
1nofA	383	46.75	b.71.1.2,c.1.8.3	92020,92021
1u6rA	380	47.43	a.83.1.1,d.128.1.2	119600,119601
2podA	410	47.63		
1jmxA	494	48.07	a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1	66901,66902,66903,66904,66905
1ig0A	319	48.44	b.82.6.1,c.100.1.1	62354,62355
2fshA	853	48.51		
1krhA	338	49.04	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2p0vA	489	49.17		
1iruK	201	50.21	d.153.1.4	71362
1zkjA	359	52.06		
1l8bA	190	52.90	d.86.1.1	73683
2bvlA	543	53.32		
2q9oA	559	53.93		
1apyB	141	56.82		
1kgsA	225	56.86	a.4.6.1,c.23.1.1	68596,68597
1dmhA	311	57.29	b.3.6.1	22633
1t1uA	639	57.93	c.43.1.3,c.43.1.3	119110,119111
2pn6A	150	58.33		
1o6zA	303	58.73	c.2.1.5,d.162.1.1	81107,81108
2okcA	445	58.98		
1ie9A	259	59.12	a.123.1.1	62318
2fa5A	162	61.68		
2iqiA	192	62.43		
2b34A	199	63.04		
1e3dB	542	63.94	e.18.1.1	59189
2opiA	212	64.32		
2bg5A	324	64.49		
2px6A	316	64.50		
1o7jA	327	65.26	c.88.1.1	81140
3c8uA	208	65.33		
2oblA	347	65.57		
2ivnA	330	66.93		
2cxiA	348	67.29		
1grj	158	68.80		
1mrzA	293	69.19	b.43.5.1,c.26.1.3	91452,91453
3b8bA	292	69.88		
2hq2A	354	70.07	e.62.1.1	136656
1xzoA	174	70.19	c.47.1.10	122474
1r1uA	106	70.98	a.4.5.5	104771
1xb4A	202	70.99	a.4.5.54,a.4.5.54	121832,121833
1mnaA	298	71.24	c.69.1.22	79322
1q9uA	130	71.85	d.129.7.1	96314
2ywnA	157	73.73		
2o07A	304	74.09	c.66.1.17	138862
1nuyA	337	74.13	e.7.1.1	86213
1t5jA	313	74.80	a.209.1.1	99125
1gxqA	106	76.57	a.4.6.1	70721
3clwA	507	79.86		
1goxA	369	80.80	c.1.4.1	28607
2h30A	164	81.42		
1i4nA	251	81.84	c.1.2.4	71114
2hvqA	335	83.10		
1xt8A	292	84.60	c.94.1.1	122293
1k2xB	143	85.09		
2hj0A	519	89.40