# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2e1nA	138	4.737		
2ia0A	171	6.702		
2coiA	386	8.881		
2qz8A	149	10.40		
2p5vA	162	11.47		
2ivmA	150	12.75		
2dbbA	151	13.03		
2cfxA	144	17.54	a.4.5.32,d.58.4.2	130395,130396
3b73A	111	20.47		
2ixaA	444	22.32		
2cyyA	151	22.58	a.4.5.32,d.58.4.2	131028,131029
1opcA	110	23.66	a.4.6.1	16231
2cg4A	152	23.93	a.4.5.32,d.58.4.2	130417,130418
1opc	110	24.97		
2e7xA	150	25.35		
1xb4A	202	26.68	a.4.5.54,a.4.5.54	121832,121833
2px6A	316	27.72		
1j3mA	129	27.83	d.129.7.1	103836
1gxqA	106	31.71	a.4.6.1	70721
1mzbA	136	33.23	a.4.5.42	91497
2p0vA	489	33.80		
1l8bA	190	36.02	d.86.1.1	73683
2ds3A	761	36.32		
2pn6A	150	37.66		
2yzvA	303	41.12		
1rjdA	334	41.64	c.66.1.37	97558
2a1hA	365	42.85	e.17.1.1	125997
1uocA	289	43.22	c.55.3.9	99686
2b5eA	504	47.14	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
2h30A	164	47.54		
1r1uA	106	48.77	a.4.5.5	104771
2oqgA	114	50.75		
2nr3A	183	52.96		
3c4hA	357	53.76		
1mqeA	207	58.63	d.113.1.1	91394
1grj	158	59.08		
1qwgA	251	60.26	c.1.27.1	96473
2q9oA	559	60.82		
1m15A	357	61.19	a.83.1.1,d.128.1.2	78368,78369
3bz6A	183	61.20		
2vglS	142	62.81		
2i88A	191	63.17		
2dqlA	115	63.46		
1p2fA	220	66.31	a.4.6.1,c.23.1.1	87720,87721
1rxwA	336	67.16	a.60.7.1,c.120.1.2	98059,98060
1u14A	172	70.83	c.51.4.3	107579
1t5jA	313	72.76	a.209.1.1	99125
1q9uA	130	73.91	d.129.7.1	96314
1zoiA	276	75.59		
1lqaA	346	76.64	c.1.7.1	84674
2hvqA	335	77.77		
2pwoA	146	78.73		
1g0sA	209	79.50	d.113.1.1	60187
2eveA	157	84.90	b.122.1.8	132427
2cwcA	303	86.67		
2a4vA	159	87.46	c.47.1.10	126163
2d1vA	108	88.69		
2icjA	233	89.52