# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	10.80		
1j3mA	129	13.59	d.129.7.1	103836
2e1nA	138	20.27		
1qwgA	251	22.01	c.1.27.1	96473
2px6A	316	26.49		
2h30A	164	26.64		
2ixaA	444	30.47		
1xl7A	612	32.43	c.43.1.3,c.43.1.3	115438,115439
2hvqA	335	34.59		
1opcA	110	36.12	a.4.6.1	16231
3b73A	111	38.94		
1uocA	289	39.70	c.55.3.9	99686
2qrvA	295	40.18		
2vglS	142	41.12		
1xo0A	324	42.40	a.60.9.1,d.163.1.1	115674,115675
2p0vA	489	43.13		
1iruK	201	43.55	d.153.1.4	71362
1xb4A	202	44.97	a.4.5.54,a.4.5.54	121832,121833
1opc	110	46.09		
1fx7A	230	49.40	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1m15A	357	51.16	a.83.1.1,d.128.1.2	78368,78369
2ia0A	171	51.37		
1gxqA	106	52.97	a.4.6.1	70721
1n40A	396	54.48	a.104.1.1	79977
2p5vA	162	58.45		
1x8vA	455	60.51	a.104.1.1	114968
1w7jA	795	61.46	b.34.3.1,c.37.1.9	120688,120689
1rypJ	204	61.81	d.153.1.4	41878
2gtqA	867	62.24		
1xzoA	174	63.67	c.47.1.10	122474
2bce	581	64.62		
2aaaA	484	65.34	b.71.1.1,c.1.8.1	27777,28764
2a4vA	159	65.47	c.47.1.10	126163
1xcrA	316	68.98	d.290.1.2	121860
1grj	158	69.67		
1ctt	294	70.05		
2i88A	191	70.34		
2iqiA	192	70.99		
2q9oA	559	71.54		
2cfxA	144	71.57	a.4.5.32,d.58.4.2	130395,130396
2dbbA	151	73.74		
1t1uA	639	75.32	c.43.1.3,c.43.1.3	119110,119111
1rjdA	334	76.13	c.66.1.37	97558
1wojA	214	76.76		
2hnkA	239	77.19		
2fa5A	162	78.21		
2hwvA	121	78.48		
1q9uA	130	79.83	d.129.7.1	96314
2cwcA	303	79.91		
2ivmA	150	80.13		
1lqaA	346	80.89	c.1.7.1	84674
2yzvA	303	82.31		
2opiA	212	82.52		
3b5oA	244	83.17		
1z6nA	167	83.39	c.47.1.1	124530
3c4hA	357	86.18		
1u5tB	169	86.45	a.4.5.54,a.4.5.54	107686,107687
2itmA	484	87.56