# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	6.481		
2e1nA	138	12.46		
2ia0A	171	15.24		
2gtqA	867	24.62		
2cfxA	144	25.14	a.4.5.32,d.58.4.2	130395,130396
2ixaA	444	26.20		
2dbbA	151	26.54		
3b73A	111	27.14		
2qz8A	149	28.41		
2fa5A	162	28.66		
2ivmA	150	29.57		
1x8vA	455	30.26	a.104.1.1	114968
2px6A	316	30.67		
3c4hA	357	31.00		
2p5vA	162	31.24		
1nofA	383	34.15	b.71.1.2,c.1.8.3	92020,92021
2hvqA	335	34.49		
1j3mA	129	35.67	d.129.7.1	103836
2p0vA	489	35.75		
1qwgA	251	36.61	c.1.27.1	96473
2bce	581	37.41		
1rjdA	334	39.21	c.66.1.37	97558
1xb4A	202	39.47	a.4.5.54,a.4.5.54	121832,121833
1n40A	396	41.29	a.104.1.1	79977
1gxqA	106	41.45	a.4.6.1	70721
2h30A	164	42.36		
3bczA	293	43.05		
1m15A	357	44.29	a.83.1.1,d.128.1.2	78368,78369
2cg4A	152	44.32	a.4.5.32,d.58.4.2	130417,130418
1ymtA	246	46.33		
2cyyA	151	49.83	a.4.5.32,d.58.4.2	131028,131029
1uocA	289	50.14	c.55.3.9	99686
1g0sA	209	51.37	d.113.1.1	60187
1opcA	110	51.76	a.4.6.1	16231
1iruK	201	52.51	d.153.1.4	71362
1wojA	214	53.12		
1xl7A	612	54.88	c.43.1.3,c.43.1.3	115438,115439
1z6nA	167	54.97	c.47.1.1	124530
1xzoA	174	57.52	c.47.1.10	122474
1q9uA	130	58.34	d.129.7.1	96314
1jcfA	344	61.06	c.55.1.1,c.55.1.1	62878,62879
1u6rA	380	61.41	a.83.1.1,d.128.1.2	119600,119601
2yzvA	303	61.59		
1opc	110	62.94		
1sw5B	275	64.40	c.94.1.1	106070
1rypJ	204	64.60	d.153.1.4	41878
3bpvA	138	66.65		
2aaaA	484	66.95	b.71.1.1,c.1.8.1	27777,28764
2gqqA	163	67.22		
1qh4A	380	67.61	a.83.1.1,d.128.1.2	18462,41197
1mzbA	136	68.35	a.4.5.42	91497
1w7jA	795	70.41	b.34.3.1,c.37.1.9	120688,120689
2qwwA	154	71.70		
2vglS	142	73.20		
1grj	158	73.37		
2a1hA	365	73.53	e.17.1.1	125997
1mqeA	207	74.08	d.113.1.1	91394
1xcrA	316	77.64	d.290.1.2	121860
2pn6A	150	77.81		
3b5oA	244	78.06		
2e7xA	150	78.89		
2hwvA	121	78.92		
2fshA	853	80.99		
2icjA	233	81.60		
2a4vA	159	83.33	c.47.1.10	126163
3cjnA	162	88.80