# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2coiA	386	9.004		
2e1nA	138	11.26		
2ia0A	171	15.08		
1qwgA	251	16.50	c.1.27.1	96473
2ivmA	150	16.55		
2cfxA	144	19.29	a.4.5.32,d.58.4.2	130395,130396
2dbbA	151	19.82		
1uocA	289	23.47	c.55.3.9	99686
2hvqA	335	23.91		
2p5vA	162	24.16		
2ixaA	444	24.72		
2qz8A	149	25.80		
2cg4A	152	29.88	a.4.5.32,d.58.4.2	130417,130418
2px6A	316	31.11		
1xcrA	316	31.75	d.290.1.2	121860
2cyyA	151	32.25	a.4.5.32,d.58.4.2	131028,131029
1n40A	396	33.38	a.104.1.1	79977
3b73A	111	37.20		
2bce	581	37.64		
1iruK	201	40.75	d.153.1.4	71362
1xl7A	612	41.60	c.43.1.3,c.43.1.3	115438,115439
1opcA	110	42.91	a.4.6.1	16231
1j3mA	129	44.74	d.129.7.1	103836
1m15A	357	46.17	a.83.1.1,d.128.1.2	78368,78369
2cwcA	303	47.88		
2h30A	164	50.85		
1rjdA	334	50.95	c.66.1.37	97558
1opc	110	52.68		
3c4hA	357	53.20		
1xb4A	202	58.04	a.4.5.54,a.4.5.54	121832,121833
1x8vA	455	59.24	a.104.1.1	114968
2fa5A	162	59.87		
2yzvA	303	60.48		
1mzbA	136	64.29	a.4.5.42	91497
1q3eA	207	64.45	b.82.3.2	95669
1gxqA	106	65.37	a.4.6.1	70721
1z6nA	167	66.02	c.47.1.1	124530
1r1uA	106	66.73	a.4.5.5	104771
2b5eA	504	67.06	c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2	127888,127889,127890,127891
1wojA	214	68.18		
2p0vA	489	68.33		
1u6rA	380	68.38	a.83.1.1,d.128.1.2	119600,119601
2a4vA	159	68.87	c.47.1.10	126163
1xzoA	174	69.44	c.47.1.10	122474
2jayA	291	70.03		
3bczA	293	70.93		
1qh4A	380	71.19	a.83.1.1,d.128.1.2	18462,41197
2a1hA	365	74.25	e.17.1.1	125997
2e7xA	150	75.01		
2pn6A	150	78.71		
1ymtA	246	82.40		
1zybA	232	83.16	a.4.5.4,b.82.3.2	125815,125816
1jcfA	344	84.26	c.55.1.1,c.55.1.1	62878,62879
1n46A	258	84.49	a.123.1.1	85315
2vglS	142	84.67		
2f57A	317	84.80		
1q9uA	130	84.82	d.129.7.1	96314
1ctt	294	85.80		
2nr3A	183	88.86		
3byvA	377	89.48		
1v25A	541	89.73	e.23.1.1	108275