# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t1uA	639	4.546	c.43.1.3,c.43.1.3	119110,119111
2coiA	386	5.439		
1nm8A	616	6.994	c.43.1.3,c.43.1.3	85872,85873
2cc0A	195	8.317	c.6.2.3	130209
2iw0A	254	8.495	c.6.2.3	137737
2e1nA	138	11.19		
1ie9A	259	17.29	a.123.1.1	62318
2cmgA	262	19.73		
2a9gA	418	28.75	d.126.1.4	126435
1w9hA	427	35.76	c.55.3.10	120785
1uocA	289	37.33	c.55.3.9	99686
2bc4B	211	40.17		
2yw2A	424	40.42		
1n40A	396	40.87	a.104.1.1	79977
2c71A	216	41.23	c.6.2.3	130017
3ch3X	265	42.52		
2hqtA	124	43.17		
1u0tA	307	43.69	e.52.1.1	107567
3cjnA	162	44.02		
2a4vA	159	44.51	c.47.1.10	126163
1l8bA	190	45.16	d.86.1.1	73683
2yydA	345	52.01		
1u6rA	380	54.21	a.83.1.1,d.128.1.2	119600,119601
1hs6A	611	56.17	a.118.1.7,b.98.1.1,d.92.1.13	61233,61234,61235
2gxgA	146	60.62		
1xl7A	612	61.06	c.43.1.3,c.43.1.3	115438,115439
2c1cA	312	61.24	c.56.5.1	129630
2dqlA	115	61.99		
2px6A	316	62.36		
1mldA	314	63.85	c.2.1.5,d.162.1.1	30122,42089
1m4zA	238	64.35	b.34.12.1	78630
1eu8A	409	65.07	c.94.1.1	59502
1r1uA	106	65.92	a.4.5.5	104771
2q9oA	559	66.49		
1vhxA	150	71.07	c.55.3.8	100712
2g3mA	693	73.44		
2eshA	118	75.35	a.4.5.61	132325
2nnuA	205	75.68	b.91.1.1	138401
2av4A	162	80.15		
2pmaA	146	80.54		
1m15A	357	83.11	a.83.1.1,d.128.1.2	78368,78369
1y14B	171	83.50	b.40.4.5,d.230.1.1	116323,116324
2nnnA	140	83.51		
2nyxA	168	85.55		
1y7wA	291	87.22		
1uedA	406	89.38	a.104.1.1	99256