# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xl7A	612	4.021	c.43.1.3,c.43.1.3	115438,115439
1t1uA	639	8.474	c.43.1.3,c.43.1.3	119110,119111
2e1nA	138	12.05		
4pgaA	337	12.31	c.88.1.1	35565
2q9oA	559	14.49		
1nm8A	616	14.60	c.43.1.3,c.43.1.3	85872,85873
2eshA	118	14.77	a.4.5.61	132325
1o7jA	327	14.89	c.88.1.1	81140
2coiA	386	15.65		
1n40A	396	23.16	a.104.1.1	79977
1fx7A	230	25.20	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
1m15A	357	26.72	a.83.1.1,d.128.1.2	78368,78369
1ymtA	246	26.81		
1r1uA	106	30.08	a.4.5.5	104771
1r1tA	122	34.01	a.4.5.5	104769
3c4hA	357	34.49		
2iw0A	254	40.74	c.6.2.3	137737
2z98A	200	46.24		
2gb7A	305	47.19		
2a4vA	159	47.61	c.47.1.10	126163
2oqgA	114	50.16		
2ad6A	571	50.52	b.70.1.1	126568
2bonA	332	52.69		
1t8tA	271	53.29	c.37.1.5	106685
1fiuA	286	57.37	c.52.1.10	33317
2nnuA	205	59.01	b.91.1.1	138401
3ch3X	265	59.14		
2ex4A	241	61.03	c.66.1.42	132516
1mzbA	136	61.74	a.4.5.42	91497
1ie9A	259	62.30	a.123.1.1	62318
2a8jA	420	62.38		
2acvA	463	63.03		
2p5vA	162	65.42		
1m4zA	238	66.40	b.34.12.1	78630
2a1hA	365	68.74	e.17.1.1	125997
2ivmA	150	70.96		
1zrhA	274	70.99		
2h29A	189	73.74		
1ojqA	212	74.32	d.166.1.1	93146
2gfiA	458	74.54		
1qh4A	380	76.30	a.83.1.1,d.128.1.2	18462,41197
2a9gA	418	76.71	d.126.1.4	126435
1wlsA	328	79.13		
2ffeA	311	79.47	c.143.1.1	133381
2g72A	289	80.80	c.66.1.15	134724
1x9mA	698	82.70	c.55.3.5,e.8.1.1	114999,115000
1wojA	214	85.20		
2btzA	394	85.66		
2fe3A	145	85.76		
2cmgA	262	86.63		
1li4A	432	86.68	c.2.1.4,c.23.12.3	84616,84617