# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1zq7A	207	4.621	d.309.1.1	125501
1k75A	434	7.960	c.82.1.2	68253
2ejwA	332	8.352		
1ornA	226	8.672	a.96.1.1	87342
2yqcA	486	8.954		
1vi9A	299	9.711	c.72.1.5	100750
1qr0A	228	12.19	d.150.1.1,d.150.1.1	59038,59039
2abkA	211	12.47	a.96.1.1	18743
1ub0A	258	13.51	c.72.1.2	88394
1zavA	180	22.89		
2exxA	306	23.06		
2ddmA	283	23.78		
2e8gA	241	24.06		
2j3xA	431	24.14		
2abk	211	24.25		
1qusA	322	24.73	d.2.1.6	36991
2f02A	323	24.97	c.72.1.1	132649
1tvlA	454	25.77	c.1.16.4	107366
2zd1A	557	26.36		
1a0p	290	27.09		
1yw1A	442	27.58	c.1.16.4	124130
1s9rA	410	28.55	d.126.1.4	98758
2a9gA	418	29.09	d.126.1.4	126435
1keaA	221	30.62	a.96.1.2	68491
1nnwA	252	31.72	d.159.1.5	80674
1td2A	287	33.17	c.72.1.5	106765
2gasA	307	34.99		
1vajA	214	35.80	d.309.1.1	119907
1djxA	624	42.48	a.39.1.7,b.7.1.1,c.1.18.1	17342,23159,29587
2ax4A	198	42.60		
1hr6A	475	42.90	d.185.1.1,d.185.1.1	61164,61165
2c1vA	338	42.91		
3cjpA	272	46.71		
2fjuB	799	47.01		
2z3yA	662	47.92		
2jg1A	330	48.03		
2dplA	308	48.58		
1n3lA	372	49.04	c.26.1.1	79966
1wx0A	223	50.36	c.1.10.1	121382
1a0pA	290	51.13	a.60.9.1,d.163.1.1	18105,42165
1v0dA	329	54.07	d.4.1.7	108204
3cx5A	431	56.80		
2i71A	400	56.90		
3cx5B	352	57.48		
1dlwA	116	58.75	a.1.1.1	14982
2cycA	375	59.26		
2j7uA	635	61.58		
2z0mA	337	61.80		
2yzhA	171	63.05		
2bwvA	440	63.36	c.55.2.1,d.127.1.1	129387,129388
1g9gA	629	64.42	a.102.1.2	83279
1xo0A	324	66.39	a.60.9.1,d.163.1.1	115674,115675
2gwgA	350	66.46	c.1.9.15	135805
2o42A	144	66.56		
1kaeA	434	72.16	c.82.1.2	72247
1f07A	321	72.38	c.1.16.3	59560
1bjaA	95	73.53	a.4.5.9	16122
2yvuA	186	75.55		
2hwvA	121	77.25		
1lvaA	258	79.97	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2e8vA	340	80.53		
1txgA	335	83.11	a.100.1.6,c.2.1.6	112775,112776
2i7pA	362	85.11		
1nnhA	294	86.24	d.104.1.1	92005
1idrA	136	86.70	a.1.1.1	62301
1k7jA	206	87.44	d.115.1.1	72103
1ubkL	534	87.76	e.18.1.1	88422
1wznA	252	88.05	c.66.1.43	121525
2v1xA	591	89.21		
1hr6B	443	89.83	d.185.1.1,d.185.1.1	61166,61167