# List of top-scoring protein chains for T0443.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2amxA 376 3.723 c.1.9.1 127024 2q7sA 290 17.59 1ycsB 239 19.90 d.211.1.1,b.34.2.1 19155,24553 2ip2A 334 21.23 1qjbA 245 28.07 a.118.7.1 19202 2c1nA 258 29.04 a.118.7.1 129640 2v9uA 132 29.55 2o02A 230 29.88 2j1qA 357 37.21 1ihoA 283 40.40 c.26.1.4 62390 1bgnA 394 51.21 c.3.1.2,d.16.1.2 30339,37870 1x7rA 245 52.47 1dobA 394 54.96 c.3.1.2,d.16.1.2 30362,37893 2qt3A 403 56.99 1cj3A 392 60.33 c.3.1.2,d.16.1.2 30347,37878 2dm6A 333 60.38 b.35.1.2,c.2.1.1 131567,131568 2ep5A 350 61.85 1cc6A 394 63.04 c.3.1.2,d.16.1.2 30344,37875 1k0iA 394 63.23 c.3.1.2,d.16.1.2 67942,67943 1iurA 88 63.37 a.2.3.1 90704 1a52A 258 64.24 a.123.1.1 19296 1cj2A 391 67.08 c.3.1.2,d.16.1.2 30351,37882 1pxaA 394 68.74 c.3.1.2,d.16.1.2 30366,37897 1bgjA 394 69.74 c.3.1.2,d.16.1.2 30352,37883 2iogA 246 69.94 1cj4A 392 70.19 c.3.1.2,d.16.1.2 30345,37876 1pbdA 394 71.59 c.3.1.2,d.16.1.2 30342,37873 1cc4A 394 71.87 c.3.1.2,d.16.1.2 30340,37871 1xpcA 248 72.71 a.123.1.1 115738 1pxcA 394 72.88 c.3.1.2,d.16.1.2 30361,37892 1iutA 394 73.33 c.3.1.2,d.16.1.2 30355,37886 1qh8B 519 74.22 c.92.2.3 35634 1gwrA 245 74.91 a.123.1.1 76368 1g50A 247 75.68 a.123.1.1 65149 1yjeA 264 76.05 1pbeA 394 76.14 c.3.1.2,d.16.1.2 30338,37869 1ub4A 110 76.33 b.34.6.2 88399 1bf3A 394 76.58 c.3.1.2,d.16.1.2 30346,37877 1gwqA 248 76.91 a.123.1.1 76366 1qkuA 250 77.11 a.123.1.1 19306 2ouzA 253 77.45 a.123.1.1 139378 2iokA 254 77.53 1bkwA 394 79.95 c.3.1.2,d.16.1.2 30343,37874 2b1zA 257 80.44 2c63A 247 80.59 2qseA 258 80.74 2pg3A 232 81.29 2fb2A 340 81.34 3ertA 261 81.68 a.123.1.1 19292 1rl9A 357 81.81 a.83.1.1,d.128.1.2 104979,104980 1ykjA 394 82.79 1errA 253 83.59 a.123.1.1 19298 1l2iA 261 86.86 a.123.1.1 73503 1tv8A 340 87.55 c.1.28.3 107352 1ufvA 276 89.46 c.26.1.4 88487