# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	9.606	d.129.7.1	103836
2e1nA	138	14.44		
2ia0A	171	19.65		
1xmaA	145	20.20	a.4.5.61	115477
1xc1A	309	22.32	c.94.1.1	109543
1sz2A	332	23.99	c.55.1.7	112169
2okxA	956	28.29		
1q9uA	130	28.44	d.129.7.1	96314
1yovA	537	30.96	c.111.1.2	123785
2dbbA	151	35.04		
2ivmA	150	35.55		
2gfiA	458	37.89		
2cg4A	152	43.22	a.4.5.32,d.58.4.2	130417,130418
2qz8A	149	44.99		
2cfxA	144	45.50	a.4.5.32,d.58.4.2	130395,130396
1k0iA	394	47.09	c.3.1.2,d.16.1.2	67942,67943
1ri7A	171	48.14	a.4.5.32,d.58.4.2	97504,97505
2p5vA	162	49.54		
2pn6A	150	52.60		
2cyyA	151	57.45	a.4.5.32,d.58.4.2	131028,131029
2fe3A	145	57.48		
1rypK	198	59.71	d.153.1.4	41879
2e7xA	150	60.46		
1opc	110	63.95		
1qwgA	251	64.69	c.1.27.1	96473
1yarH	217	66.08	d.153.1.4	122844
2ri9A	475	66.54		
2e7yA	280	68.77		
1bxeA	113	69.80	d.55.1.1	38898
1iruK	201	73.68	d.153.1.4	71362
2gqqA	163	75.20		
2pmuA	110	75.42		
1h4vB	421	76.13	c.51.1.1,d.104.1.1	60624,60625
1odzA	386	79.98	c.1.8.3	86889
1opcA	110	81.13	a.4.6.1	16231
2gkgA	127	81.69		
1rypJ	204	82.62	d.153.1.4	41878
1od6A	160	82.84	c.26.1.3	86836
1zavA	180	84.47		
2z8fA	412	84.72		
1ys7A	233	85.85	a.4.6.1,c.23.1.1	123961,123962
3clwA	507	87.64		
1oheA	348	87.67	c.45.1.1,c.45.1.1	87013,87014
2o5hA	136	88.26		
2fu4A	83	88.54