# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	4.659	d.129.7.1	103836
1sz2A	332	14.02	c.55.1.7	112169
2e1nA	138	16.12		
2qklA	127	19.78		
1q9uA	130	21.45	d.129.7.1	96314
1xmaA	145	24.58	a.4.5.61	115477
2ia0A	171	27.58		
2okxA	956	29.20		
2gfiA	458	35.10		
1rypK	198	36.28	d.153.1.4	41879
1yovA	537	37.69	c.111.1.2	123785
3clwA	507	38.01		
1iruK	201	42.96	d.153.1.4	71362
1bxeA	113	45.74	d.55.1.1	38898
1jj2Q	154	45.92	d.55.1.1	63102
1ri7A	171	45.99	a.4.5.32,d.58.4.2	97504,97505
1xc1A	309	46.81	c.94.1.1	109543
2p5vA	162	53.61		
1h4vB	421	55.37	c.51.1.1,d.104.1.1	60624,60625
2cyyA	151	61.21	a.4.5.32,d.58.4.2	131028,131029
2pn6A	150	61.54		
2ivmA	150	63.59		
2e7xA	150	64.91		
1sfxA	109	69.63	a.4.5.50	105505
2qz8A	149	69.78		
1yarH	217	70.63	d.153.1.4	122844
2cfxA	144	71.89	a.4.5.32,d.58.4.2	130395,130396
1smtA	122	72.50	a.4.5.5	16109
1r1uA	106	72.75	a.4.5.5	104771
1r1tA	122	73.37	a.4.5.5	104769
1qwgA	251	74.57	c.1.27.1	96473
1jqeA	292	74.88	c.66.1.19	71789
2ri9A	475	78.18		
2a1hA	365	83.73	e.17.1.1	125997
2fe3A	145	85.08		
3bz6A	183	85.40		
1grj	158	86.23		
2dbbA	151	87.33		
1u5tB	169	87.87	a.4.5.54,a.4.5.54	107686,107687
1rypJ	204	87.87	d.153.1.4	41878
2pmuA	110	89.72