# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	4.286	d.129.7.1	103836
1sz2A	332	4.384	c.55.1.7	112169
1yovA	537	8.171	c.111.1.2	123785
2e1nA	138	12.50		
1ri7A	171	12.78	a.4.5.32,d.58.4.2	97504,97505
2ia0A	171	13.11		
2gfiA	458	16.73		
1qwgA	251	17.96	c.1.27.1	96473
1xmaA	145	20.42	a.4.5.61	115477
2yzvA	303	20.74		
2cfxA	144	21.62	a.4.5.32,d.58.4.2	130395,130396
1q9uA	130	23.07	d.129.7.1	96314
2cg4A	152	23.46	a.4.5.32,d.58.4.2	130417,130418
2cyyA	151	25.72	a.4.5.32,d.58.4.2	131028,131029
2dbbA	151	27.20		
1k0iA	394	27.29	c.3.1.2,d.16.1.2	67942,67943
1jk7A	323	27.68	d.159.1.3	63144
2ivmA	150	27.95		
2qklA	127	28.02		
2qz8A	149	29.23		
1sw2A	275	29.87	c.94.1.1	106064
2nr3A	183	30.81		
2dq6A	870	33.81		
2p5vA	162	34.28		
1bxeA	113	35.95	d.55.1.1	38898
1iruK	201	43.03	d.153.1.4	71362
2gqqA	163	43.61		
1rypK	198	44.84	d.153.1.4	41879
2e7yA	280	44.94		
2fu4A	83	50.73		
1usgA	346	50.79	c.93.1.1	99864
2puzA	419	51.13		
2rjbA	455	51.58		
3bz6A	183	51.88		
2pn6A	150	52.11		
1r1uA	106	52.33	a.4.5.5	104771
1vdwA	254	52.60	e.7.1.1	100569
2ejaA	338	52.97		
2f2eA	146	54.02	a.4.5.69	132808
1q06A	135	56.00	a.6.1.3	95493
1mzbA	136	58.45	a.4.5.42	91497
3b34A	891	61.16		
1sfxA	109	65.70	a.4.5.50	105505
1smtA	122	66.07	a.4.5.5	16109
1r1tA	122	67.03	a.4.5.5	104769
1rypL	212	67.43	d.153.1.4	41880
1ldjA	760	68.34	a.4.5.34,a.118.17.1,e.40.1.1	73847,73848,73849
1grj	158	68.50		
1rfzA	168	70.87	a.195.1.1	97411
1i4jA	110	71.42	d.55.1.1	76734
2e7xA	150	71.85		
2o8sA	323	72.76		
1p2fA	220	74.87	a.4.6.1,c.23.1.1	87720,87721
1mldA	314	75.57	c.2.1.5,d.162.1.1	30122,42089
2qh8A	302	76.47		
2pmuA	110	79.58		
1okrA	123	79.66	a.4.5.39	93269
1rxwA	336	82.39	a.60.7.1,c.120.1.2	98059,98060
1h4vB	421	84.28	c.51.1.1,d.104.1.1	60624,60625
2iuyA	342	84.44		
1rypJ	204	85.09	d.153.1.4	41878
1yxyA	234	88.03	c.1.2.5	124203
1qmvA	197	88.94	c.47.1.10	33066
2dqlA	115	89.55