# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gfiA	458	4.403		
1xmaA	145	4.519	a.4.5.61	115477
1j3mA	129	5.053	d.129.7.1	103836
1sz2A	332	8.259	c.55.1.7	112169
2e1nA	138	21.07		
1yovA	537	21.78	c.111.1.2	123785
2ia0A	171	22.51		
1xc1A	309	22.75	c.94.1.1	109543
1iruK	201	28.07	d.153.1.4	71362
2ivmA	150	28.95		
1rypK	198	29.82	d.153.1.4	41879
1k0iA	394	30.97	c.3.1.2,d.16.1.2	67942,67943
2dbbA	151	31.87		
2okxA	956	35.15		
3bjdA	332	36.22		
2fu4A	83	38.05		
2gkgA	127	40.22		
2fe3A	145	42.80		
1h4vB	421	43.00	c.51.1.1,d.104.1.1	60624,60625
1kgsA	225	45.74	a.4.6.1,c.23.1.1	68596,68597
1jk7A	323	47.26	d.159.1.3	63144
3clwA	507	49.49		
2cyyA	151	49.68	a.4.5.32,d.58.4.2	131028,131029
2cg4A	152	50.77	a.4.5.32,d.58.4.2	130417,130418
2qz8A	149	51.32		
1auiB	169	51.42	a.39.1.5	17325
1jqeA	292	52.27	c.66.1.19	71789
1qwgA	251	52.36	c.1.27.1	96473
1sd4A	126	52.50	a.4.5.39	105428
1xm9A	457	52.89	a.118.1.24	122142
1mzbA	136	53.37	a.4.5.42	91497
1oheA	348	54.18	c.45.1.1,c.45.1.1	87013,87014
2e7yA	280	54.50		
1mrp	309	55.13		
2o09A	189	55.26		
1r1uA	106	55.72	a.4.5.5	104771
2cfxA	144	58.15	a.4.5.32,d.58.4.2	130395,130396
1yvvA	336	59.05		
1rypJ	204	60.58	d.153.1.4	41878
1opc	110	62.85		
2ri9A	475	64.20		
1q9uA	130	66.39	d.129.7.1	96314
2oi2A	292	68.98		
1sw2A	275	73.92	c.94.1.1	106064
1p2fA	220	75.53	a.4.6.1,c.23.1.1	87720,87721
1ekfA	365	81.46	e.17.1.1	59445
2a1hA	365	81.64	e.17.1.1	125997
2qgaB	465	82.80		
2iuyA	342	86.36		
1q06A	135	86.76	a.6.1.3	95493
2p5vA	162	87.07		
2dq6A	870	87.46		
2hhmA	276	87.59	e.7.1.1	42955