# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xmaA	145	3.684	a.4.5.61	115477
2gfiA	458	7.396		
1j3mA	129	9.746	d.129.7.1	103836
3bjdA	332	13.66		
2ia0A	171	13.95		
1sz2A	332	16.97	c.55.1.7	112169
3clwA	507	17.30		
1yovA	537	18.53	c.111.1.2	123785
2e1nA	138	19.99		
2fu4A	83	21.80		
1jqeA	292	23.08	c.66.1.19	71789
2dbbA	151	23.16		
2ivmA	150	23.68		
1rypK	198	24.36	d.153.1.4	41879
1xc1A	309	25.63	c.94.1.1	109543
1iruK	201	26.31	d.153.1.4	71362
2okxA	956	33.03		
2fe3A	145	33.25		
1mzbA	136	33.83	a.4.5.42	91497
2cg4A	152	36.83	a.4.5.32,d.58.4.2	130417,130418
2gkgA	127	39.15		
2cyyA	151	40.67	a.4.5.32,d.58.4.2	131028,131029
1k0iA	394	43.02	c.3.1.2,d.16.1.2	67942,67943
2e7yA	280	43.11		
1auiB	169	44.06	a.39.1.5	17325
2cfxA	144	46.07	a.4.5.32,d.58.4.2	130395,130396
2qz8A	149	47.35		
1sd4A	126	48.09	a.4.5.39	105428
1rypJ	204	48.96	d.153.1.4	41878
1mrp	309	52.48		
1v7wA	807	52.59	a.102.1.4,b.30.5.3	108411,108412
2oi2A	292	53.72		
1opc	110	56.28		
1xm9A	457	58.56	a.118.1.24	122142
1h4vB	421	59.18	c.51.1.1,d.104.1.1	60624,60625
1oheA	348	59.18	c.45.1.1,c.45.1.1	87013,87014
1qwgA	251	59.84	c.1.27.1	96473
2ri9A	475	64.06		
1p2fA	220	64.54	a.4.6.1,c.23.1.1	87720,87721
2yv5A	302	66.37		
1r1uA	106	67.97	a.4.5.5	104771
1nc5A	373	70.39	a.102.1.6	85548
2o09A	189	73.14		
1ri7A	171	74.21	a.4.5.32,d.58.4.2	97504,97505
1t5jA	313	76.13	a.209.1.1	99125
2e7xA	150	77.38		
1yarH	217	77.65	d.153.1.4	122844
1yvvA	336	78.01		
1ekfA	365	78.92	e.17.1.1	59445
1nxcA	478	80.00	a.102.2.1	92293
2a1hA	365	80.11	e.17.1.1	125997
1q06A	135	81.26	a.6.1.3	95493
2o5hA	136	81.39		
1vl5A	260	87.30	c.66.1.41	108720