# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xmaA	145	5.591	a.4.5.61	115477
2gfiA	458	7.354		
1j3mA	129	9.134	d.129.7.1	103836
1sz2A	332	10.20	c.55.1.7	112169
1xc1A	309	17.28	c.94.1.1	109543
2ia0A	171	20.27		
2dbbA	151	20.40		
2e1nA	138	21.28		
3clwA	507	22.26		
2fu4A	83	23.65		
3bjdA	332	24.73		
1yovA	537	25.56	c.111.1.2	123785
1k0iA	394	29.58	c.3.1.2,d.16.1.2	67942,67943
1iruK	201	30.70	d.153.1.4	71362
2e7yA	280	34.30		
2ivmA	150	34.87		
1rypK	198	35.03	d.153.1.4	41879
2cg4A	152	39.19	a.4.5.32,d.58.4.2	130417,130418
1qwgA	251	39.53	c.1.27.1	96473
1h4vB	421	40.08	c.51.1.1,d.104.1.1	60624,60625
1mzbA	136	40.14	a.4.5.42	91497
2gkgA	127	41.81		
1jqeA	292	43.06	c.66.1.19	71789
3b5oA	244	44.30		
1yvvA	336	44.86		
2qz8A	149	45.40		
2cfxA	144	45.61	a.4.5.32,d.58.4.2	130395,130396
2cyyA	151	45.68	a.4.5.32,d.58.4.2	131028,131029
2fe3A	145	45.95		
1auiB	169	46.34	a.39.1.5	17325
1mrp	309	48.15		
2o09A	189	58.16		
1nc5A	373	59.82	a.102.1.6	85548
2ri9A	475	60.62		
1opc	110	61.33		
1r1uA	106	65.39	a.4.5.5	104771
2e7xA	150	66.53		
2oi2A	292	69.25		
1u5tB	169	71.51	a.4.5.54,a.4.5.54	107686,107687
1q06A	135	71.60	a.6.1.3	95493
1oheA	348	73.32	c.45.1.1,c.45.1.1	87013,87014
1rypJ	204	74.69	d.153.1.4	41878
2bkhA	814	75.43		
2iuyA	342	76.77		
2okxA	956	77.69		
1p2fA	220	78.75	a.4.6.1,c.23.1.1	87720,87721
1t5jA	313	83.04	a.209.1.1	99125
2pmuA	110	83.31		
1sd4A	126	83.59	a.4.5.39	105428
1q9uA	130	84.27	d.129.7.1	96314
2qgaB	465	84.53		
1ri7A	171	85.64	a.4.5.32,d.58.4.2	97504,97505
1kgsA	225	85.72	a.4.6.1,c.23.1.1	68596,68597
1zavA	180	86.63