# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2iw0A	254	0.5921	c.6.2.3	137737
1k0iA	394	2.521	c.3.1.2,d.16.1.2	67942,67943
1xmaA	145	4.823	a.4.5.61	115477
2e1nA	138	7.945		
3bp1A	290	9.358		
2oqgA	114	10.44		
1t1uA	639	11.09	c.43.1.3,c.43.1.3	119110,119111
1gp6A	356	13.46	b.82.2.1	65441
1nm8A	616	14.66	c.43.1.3,c.43.1.3	85872,85873
1jqeA	292	18.47	c.66.1.19	71789
1xc1A	309	18.97	c.94.1.1	109543
1pbe	394	19.82		
1ri7A	171	21.52	a.4.5.32,d.58.4.2	97504,97505
1j3mA	129	22.16	d.129.7.1	103836
1r1uA	106	22.90	a.4.5.5	104771
2gkgA	127	24.39		
2e7yA	280	31.06		
2dq6A	870	31.90		
2z8fA	412	33.38		
1sfxA	109	33.69	a.4.5.50	105505
2pmuA	110	34.70		
2qz8A	149	37.05		
1kdoA	227	37.59	c.37.1.1	68478
2ivmA	150	37.79		
2dbnA	461	38.30		
2cg4A	152	39.61	a.4.5.32,d.58.4.2	130417,130418
2gfiA	458	41.22		
1r1tA	122	41.72	a.4.5.5	104769
2p5vA	162	42.47		
2ddxA	333	42.61		
1smtA	122	43.27	a.4.5.5	16109
2j58A	359	43.71		
2ia0A	171	45.45		
2r7dA	469	46.16		
1mrp	309	46.20		
2vglB	591	49.11		
1od6A	160	49.65	c.26.1.3	86836
2dbbA	151	51.72		
2cfxA	144	52.33	a.4.5.32,d.58.4.2	130395,130396
1ulyA	192	53.84	a.4.5.58	113297
1jj2Q	154	53.92	d.55.1.1	63102
2yu1A	451	54.80		
2rkhA	180	55.03		
1eguA	731	57.21	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1r0kA	388	60.67	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
2bnlA	136	61.30		
1dqeA	137	63.14	a.39.2.1	17388
1xl7A	612	63.47	c.43.1.3,c.43.1.3	115438,115439
2dqlA	115	63.67		
1jcfA	344	66.59	c.55.1.1,c.55.1.1	62878,62879
2rdpA	150	67.11		
1fm0D	81	67.26	d.15.3.1	37642
2p5iA	288	69.07		
2cyyA	151	70.89	a.4.5.32,d.58.4.2	131028,131029
2c1iA	431	70.96	c.6.2.3,d.341.1.1	129636,129637
1q35A	320	72.20	c.94.1.1	95661
2nr3A	183	75.24		
1qwgA	251	78.24	c.1.27.1	96473
2d1vA	108	79.36		
1yovA	537	80.51	c.111.1.2	123785
2eveA	157	81.83	b.122.1.8	132427
2qh8A	302	86.09		
2gxgA	146	87.02		
2cc0A	195	87.62	c.6.2.3	130209
3c4vA	426	89.25		
1wixA	164	89.57	a.40.3.1	114683