# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	7.360	d.129.7.1	103836
1sz2A	332	13.56	c.55.1.7	112169
2gfiA	458	13.69		
2e1nA	138	14.56		
2ia0A	171	15.37		
1xmaA	145	18.26	a.4.5.61	115477
1q9uA	130	21.43	d.129.7.1	96314
2dbbA	151	23.53		
2qz8A	149	28.85		
2ivmA	150	29.47		
2cfxA	144	32.01	a.4.5.32,d.58.4.2	130395,130396
2p5vA	162	35.32		
1yovA	537	39.00	c.111.1.2	123785
1jk7A	323	40.59	d.159.1.3	63144
1rypK	198	42.65	d.153.1.4	41879
2cg4A	152	44.04	a.4.5.32,d.58.4.2	130417,130418
2cyyA	151	45.30	a.4.5.32,d.58.4.2	131028,131029
2e7xA	150	45.38		
2o09A	189	50.50		
2pn6A	150	53.93		
2e7yA	280	54.52		
2ri9A	475	66.26		
1k0iA	394	67.00	c.3.1.2,d.16.1.2	67942,67943
1khvA	516	71.57	e.8.1.4	68627
1sw2A	275	72.35	c.94.1.1	106064
2iuyA	342	79.86		
1r1uA	106	79.89	a.4.5.5	104771
1yvvA	336	80.27		
1bxeA	113	85.59	d.55.1.1	38898
2gkgA	127	85.61		
1opc	110	87.39		
2bkhA	814	87.62		
1iruK	201	87.64	d.153.1.4	71362
1qwgA	251	87.70	c.1.27.1	96473
1odzA	386	87.87	c.1.8.3	86889
1q06A	135	89.02	a.6.1.3	95493