# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2dq6A 870 2.518 2yzvA 303 2.520 1sz2A 332 3.045 c.55.1.7 112169 1j3mA 129 3.823 d.129.7.1 103836 1ea9C 583 11.95 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 2ia0A 171 12.95 2vglS 142 13.06 2e1nA 138 13.49 1s6yA 450 14.03 c.2.1.5,d.162.1.2 105314,105315 2fozA 347 15.68 1xmaA 145 15.78 a.4.5.61 115477 3b34A 891 17.28 2gakA 391 17.86 1rypK 198 18.75 d.153.1.4 41879 3clwA 507 20.94 1q9uA 130 21.18 d.129.7.1 96314 2dbbA 151 22.77 2o09A 189 22.91 2ri9A 475 23.01 3bjdA 332 23.34 2cg4A 152 24.86 a.4.5.32,d.58.4.2 130417,130418 1iruK 201 26.13 d.153.1.4 71362 2ivmA 150 26.32 1zbpA 273 28.34 e.61.1.1 124861 1auiA 521 29.04 d.159.1.3 42085 1vprA 374 29.06 b.60.1.7 120066 2o2pA 517 29.32 1v7wA 807 30.55 a.102.1.4,b.30.5.3 108411,108412 2v26A 784 32.32 1auiB 169 33.93 a.39.1.5 17325 2aaa 484 33.97 2e7yA 280 35.70 2cfxA 144 35.93 a.4.5.32,d.58.4.2 130395,130396 2r7dA 469 36.10 2jesA 503 36.15 1jk7A 323 36.93 d.159.1.3 63144 2g3mA 693 37.29 1grj 158 39.25 1j32A 388 39.81 c.67.1.1 77067 1jdwA 423 40.98 d.126.1.2 41129 2rjbA 455 43.60 1p2fA 220 43.66 a.4.6.1,c.23.1.1 87720,87721 1zxxA 319 44.56 1k0iA 394 44.73 c.3.1.2,d.16.1.2 67942,67943 2bkhA 814 45.13 2cyyA 151 45.39 a.4.5.32,d.58.4.2 131028,131029 1xm9A 457 45.76 a.118.1.24 122142 1opcA 110 48.52 a.4.6.1 16231 1wzlA 585 48.56 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2okcA 445 48.95 2p5vA 162 49.58 1nc5A 373 50.50 a.102.1.6 85548 1opc 110 51.43 1khvA 516 51.84 e.8.1.4 68627 1qwgA 251 51.90 c.1.27.1 96473 1jmxA 494 52.00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1imbA 277 52.15 e.7.1.1 42957 1t5jA 313 53.27 a.209.1.1 99125 1gox 370 53.69 2gkgA 127 54.39 1kgsA 225 54.72 a.4.6.1,c.23.1.1 68596,68597 1sw2A 275 55.38 c.94.1.1 106064 1od6A 160 55.61 c.26.1.3 86836 2jayA 291 57.18 2e7xA 150 59.02 2opiA 212 59.18 1omiA 248 61.81 b.82.3.3,a.4.5.4 87079,87080 1yovA 537 62.52 c.111.1.2 123785 2ohhA 404 65.95 1okrA 123 66.31 a.4.5.39 93269 2pn6A 150 67.74 1ri7A 171 69.55 a.4.5.32,d.58.4.2 97504,97505 2coiA 386 73.22 1r1uA 106 75.18 a.4.5.5 104771 1q06A 135 75.26 a.6.1.3 95493 1qmvA 197 77.33 c.47.1.10 33066 2akaA 776 78.63 1sd4A 126 78.68 a.4.5.39 105428 1m2eA 135 79.29 c.23.1.5 78478 1u2hA 99 81.45 2pmuA 110 81.49 1a8y 367 84.25 1rypL 212 85.62 d.153.1.4 41880 1u6rA 380 88.32 a.83.1.1,d.128.1.2 119600,119601 2uyeA 307 89.69