# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	9.580	d.129.7.1	103836
1sz2A	332	12.45	c.55.1.7	112169
2gfiA	458	18.23		
2e1nA	138	19.10		
2ia0A	171	20.16		
1xmaA	145	20.95	a.4.5.61	115477
1q9uA	130	30.01	d.129.7.1	96314
2dbbA	151	33.28		
2ivmA	150	34.07		
2qz8A	149	35.34		
1yovA	537	38.80	c.111.1.2	123785
1qwgA	251	40.93	c.1.27.1	96473
2cfxA	144	44.35	a.4.5.32,d.58.4.2	130395,130396
2e7yA	280	46.21		
1rypK	198	46.70	d.153.1.4	41879
2cyyA	151	48.84	a.4.5.32,d.58.4.2	131028,131029
2p5vA	162	49.35		
2cg4A	152	54.40	a.4.5.32,d.58.4.2	130417,130418
1jk7A	323	55.01	d.159.1.3	63144
2iuyA	342	60.59		
2ri9A	475	61.23		
2o09A	189	62.08		
2e7xA	150	62.46		
1odzA	386	64.89	c.1.8.3	86889
1m2eA	135	65.74	c.23.1.5	78478
2okxA	956	70.20		
2bkhA	814	71.71		
1khvA	516	75.12	e.8.1.4	68627
1opc	110	77.46		
2pn6A	150	80.19		
3bp1A	290	84.42		
1ri7A	171	86.99	a.4.5.32,d.58.4.2	97504,97505
1sw2A	275	88.23	c.94.1.1	106064
2yzvA	303	90.00