# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	4.228	d.129.7.1	103836
2gfiA	458	11.34		
1rypK	198	16.66	d.153.1.4	41879
1sz2A	332	20.55	c.55.1.7	112169
1iruK	201	28.35	d.153.1.4	71362
1xmaA	145	31.57	a.4.5.61	115477
2okxA	956	32.09		
2e7yA	280	35.71		
1qwgA	251	37.34	c.1.27.1	96473
2e1nA	138	37.57		
1q9uA	130	37.83	d.129.7.1	96314
2ri9A	475	38.59		
3b5oA	244	39.01		
2qklA	127	41.23		
1rypJ	204	42.71	d.153.1.4	41878
1rypH	205	47.21	d.153.1.4	41876
1yvvA	336	47.58		
2yzvA	303	52.29		
1rypL	212	54.26	d.153.1.4	41880
1yovA	537	58.18	c.111.1.2	123785
1h4vB	421	58.81	c.51.1.1,d.104.1.1	60624,60625
1yarH	217	67.54	d.153.1.4	122844
1p2fA	220	67.62	a.4.6.1,c.23.1.1	87720,87721
2qgaB	465	73.58		
1jqeA	292	77.36	c.66.1.19	71789
2ia0A	171	79.54		
1v7wA	807	81.15	a.102.1.4,b.30.5.3	108411,108412
1xc1A	309	82.62	c.94.1.1	109543
1t5jA	313	84.68	a.209.1.1	99125
2ejaA	338	84.71		
1opc	110	86.85