# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1j3mA	129	4.433	d.129.7.1	103836
1yovA	537	12.22	c.111.1.2	123785
1sz2A	332	12.44	c.55.1.7	112169
2gfiA	458	14.48		
2e1nA	138	16.09		
1xmaA	145	19.22	a.4.5.61	115477
1rypK	198	19.46	d.153.1.4	41879
2ia0A	171	24.06		
2okxA	956	29.02		
1qwgA	251	29.24	c.1.27.1	96473
1q9uA	130	33.12	d.129.7.1	96314
1jqeA	292	39.21	c.66.1.19	71789
2yzvA	303	42.43		
1iruK	201	43.09	d.153.1.4	71362
2ri9A	475	44.54		
1ri7A	171	44.76	a.4.5.32,d.58.4.2	97504,97505
2e7yA	280	46.87		
1rypJ	204	47.37	d.153.1.4	41878
2qgaB	465	51.22		
2cfxA	144	53.03	a.4.5.32,d.58.4.2	130395,130396
3b5oA	244	53.78		
2qz8A	149	54.55		
2ivmA	150	59.25		
1t5jA	313	59.49	a.209.1.1	99125
2qklA	127	60.45		
3clwA	507	60.64		
1bxeA	113	63.00	d.55.1.1	38898
2cyyA	151	64.94	a.4.5.32,d.58.4.2	131028,131029
1h4vB	421	66.90	c.51.1.1,d.104.1.1	60624,60625
2dbbA	151	67.81		
1nc5A	373	68.24	a.102.1.6	85548
2a6tA	271	69.44	a.242.1.1,d.113.1.7	126309,126310
2cg4A	152	70.80	a.4.5.32,d.58.4.2	130417,130418
2gqqA	163	72.60		
1rypL	212	73.51	d.153.1.4	41880
2gkgA	127	74.38		
1p2fA	220	75.41	a.4.6.1,c.23.1.1	87720,87721
1nstA	325	78.14	c.37.1.5	31951
1rypH	205	78.40	d.153.1.4	41876
2dcfA	392	79.68		
2rjbA	455	81.26		
2puzA	419	84.04		
1yarH	217	87.13	d.153.1.4	122844
1sfxA	109	88.24	a.4.5.50	105505
1opc	110	89.62		
1od6A	160	89.74	c.26.1.3	86836