# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1sz2A	332	8.456	c.55.1.7	112169
1j3mA	129	9.045	d.129.7.1	103836
1qwgA	251	16.70	c.1.27.1	96473
2gfiA	458	17.02		
1xmaA	145	17.74	a.4.5.61	115477
1rypK	198	19.21	d.153.1.4	41879
2e1nA	138	21.51		
2yzvA	303	25.98		
1iruK	201	26.12	d.153.1.4	71362
1yovA	537	31.00	c.111.1.2	123785
2okxA	956	32.64		
2qklA	127	33.61		
2ia0A	171	35.15		
1rypL	212	35.34	d.153.1.4	41880
1rypJ	204	37.07	d.153.1.4	41878
1ri7A	171	46.01	a.4.5.32,d.58.4.2	97504,97505
1rypH	205	46.60	d.153.1.4	41876
1p2fA	220	47.13	a.4.6.1,c.23.1.1	87720,87721
1xc1A	309	53.08	c.94.1.1	109543
2e7yA	280	53.38		
2ivmA	150	55.19		
1q9uA	130	59.34	d.129.7.1	96314
3clwA	507	65.02		
2cyyA	151	65.96	a.4.5.32,d.58.4.2	131028,131029
2cfxA	144	69.01	a.4.5.32,d.58.4.2	130395,130396
1yarH	217	72.10	d.153.1.4	122844
1t5jA	313	72.28	a.209.1.1	99125
2ri9A	475	77.87		
1rypI	222	79.38	d.153.1.4	41877
2dbbA	151	82.29		
2cg4A	152	82.68	a.4.5.32,d.58.4.2	130417,130418
3bp1A	290	84.01		
2iuyA	342	84.12		
1opc	110	85.77		
3b5oA	244	86.27		
3c4vA	426	86.62		
2nr3A	183	89.80