# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2iw0A	254	0.5109	c.6.2.3	137737
1nm8A	616	5.369	c.43.1.3,c.43.1.3	85872,85873
1xmaA	145	7.057	a.4.5.61	115477
2e1nA	138	8.515		
1k0iA	394	8.685	c.3.1.2,d.16.1.2	67942,67943
1t1uA	639	16.73	c.43.1.3,c.43.1.3	119110,119111
1xl7A	612	22.26	c.43.1.3,c.43.1.3	115438,115439
1pbe	394	24.04		
1j3mA	129	24.06	d.129.7.1	103836
2oqgA	114	28.09		
2i7gA	376	29.31		
2cc0A	195	29.73	c.6.2.3	130209
2e7yA	280	32.75		
1xvwA	160	36.27	c.47.1.10	122387
1u2xA	474	36.35	c.72.1.3	107622
1eguA	731	36.89	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2j5zA	221	37.25		
2gfiA	458	40.59		
2r7dA	469	41.13		
1gp6A	356	44.32	b.82.2.1	65441
3bp1A	290	46.75		
2chuA	296	47.66	c.92.2.4	130485
2gs8A	317	49.97		
2pzmA	330	51.07		
1r1uA	106	52.06	a.4.5.5	104771
2z8fA	412	52.54		
1isiA	265	53.60	c.23.14.3	71394
1xdpA	687	54.18	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
1u5tB	169	54.61	a.4.5.54,a.4.5.54	107686,107687
1v8fA	276	55.65	c.26.1.4	100503
2gj8A	172	60.08	c.37.1.8	135270
1r0kA	388	61.55	a.69.3.1,c.2.1.3,d.81.1.3	104723,104724,104725
2gxgA	146	65.23		
1xc1A	309	70.41	c.94.1.1	109543
1q35A	320	70.54	c.94.1.1	95661
1jk7A	323	81.65	d.159.1.3	63144
1qgrA	876	81.89	a.118.1.1	19119
2ds3A	761	81.96		
1sfxA	109	82.64	a.4.5.50	105505
1m9uA	241	82.84	b.47.1.2	74601
2qipA	165	83.39		
1xt9A	212	83.84	d.3.1.7	116013
2hqtA	124	84.04		
2j58A	359	86.03		
1jj2Q	154	88.83	d.55.1.1	63102
2eshA	118	89.48	a.4.5.61	132325