# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xmaA	145	2.885	a.4.5.61	115477
1j3mA	129	13.91	d.129.7.1	103836
2e1nA	138	13.92		
2gfiA	458	20.53		
1h4vB	421	20.71	c.51.1.1,d.104.1.1	60624,60625
1yovA	537	22.33	c.111.1.2	123785
1k0iA	394	26.72	c.3.1.2,d.16.1.2	67942,67943
2i44A	324	31.29		
2h7oA	303	32.61		
1xl7A	612	32.68	c.43.1.3,c.43.1.3	115438,115439
2h29A	189	34.00		
2j4oA	401	34.43		
1r1uA	106	34.50	a.4.5.5	104771
1t1uA	639	35.31	c.43.1.3,c.43.1.3	119110,119111
1q9uA	130	37.31	d.129.7.1	96314
1ekfA	365	38.53	e.17.1.1	59445
2iw0A	254	40.07	c.6.2.3	137737
1nm8A	616	41.25	c.43.1.3,c.43.1.3	85872,85873
2qmjA	870	43.18		
1sfxA	109	43.47	a.4.5.50	105505
4pgaA	337	43.48	c.88.1.1	35565
1o7jA	327	47.23	c.88.1.1	81140
2hxpA	155	47.71		
2eshA	118	47.96	a.4.5.61	132325
1xdpA	687	50.99	a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4	121896,121897,121898,121899
2ia0A	171	55.93		
1fiuA	286	56.01	c.52.1.10	33317
2cblA	305	57.15	a.39.1.7,a.48.1.1,d.93.1.1	17380,17774,40528
2e01A	457	59.50		
2phlA	397	61.16	b.82.1.2,b.82.1.2	28082,28083
1grj	158	63.06		
1nbaA	264	63.62	c.33.1.3	31753
2ivmA	150	67.56		
1ri7A	171	70.15	a.4.5.32,d.58.4.2	97504,97505
2j7uA	635	71.59		
2dq6A	870	73.98		
1rypK	198	74.58	d.153.1.4	41879
3clwA	507	74.80		
1jk7A	323	74.97	d.159.1.3	63144
1r1tA	122	79.73	a.4.5.5	104769
1g5hA	454	80.03	c.51.1.1,d.104.1.1	60270,60271
1jj2Q	154	80.04	d.55.1.1	63102
2fh5B	214	84.17	c.37.1.8	133478
1h2kA	349	88.16	b.82.2.6	76572
1jcfA	344	89.35	c.55.1.1,c.55.1.1	62878,62879