# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zq7A 207 2.422 d.309.1.1 125501 1ornA 226 3.013 a.96.1.1 87342 1vajA 214 5.283 d.309.1.1 119907 1vi9A 299 6.698 c.72.1.5 100750 1ub0A 258 7.024 c.72.1.2 88394 2f02A 323 9.025 c.72.1.1 132649 1qr0A 228 10.91 d.150.1.1,d.150.1.1 59038,59039 1a0p 290 11.95 3c1oA 321 12.91 1wx0A 223 13.73 c.1.10.1 121382 3biqA 467 14.03 1ceoA 343 15.88 c.1.8.3 28808 1qusA 322 16.16 d.2.1.6 36991 3bc9A 599 19.43 1td2A 287 22.38 c.72.1.5 106765 2ddmA 283 23.10 2abkA 211 23.20 a.96.1.1 18743 2c43A 323 23.83 1u04A 771 25.18 b.34.14.1,c.55.3.10 107539,107540 2abk 211 26.04 1tvlA 454 26.20 c.1.16.4 107366 1zavA 180 26.42 2v1xA 591 27.16 1prxA 224 29.42 c.47.1.10 33076 1djxB 624 30.12 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 3bp1A 290 30.15 2ax4A 198 30.53 1kgsA 225 33.13 a.4.6.1,c.23.1.1 68596,68597 1rp3A 239 33.19 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1ab4 477 35.06 1al3A 324 36.68 c.94.1.1 35835 1a0pA 290 39.59 a.60.9.1,d.163.1.1 18105,42165 1kpgA 287 40.25 c.66.1.18 68735 1s9rA 410 40.73 d.126.1.4 98758 2zd1A 557 41.18 3cx5A 431 42.11 1k7jA 206 42.60 d.115.1.1 72103 1dpbA 243 43.54 c.43.1.1 32618 1u5tB 169 43.81 a.4.5.54,a.4.5.54 107686,107687 1wcwA 261 44.00 1f44A 324 45.42 a.60.9.1,d.163.1.1 64982,64983 2i00A 406 46.29 1jxhA 288 46.38 c.72.1.2 67415 1hr6B 443 46.99 d.185.1.1,d.185.1.1 61166,61167 2j3xA 431 51.94 1k75A 434 53.59 c.82.1.2 68253 1yw1A 442 53.62 c.1.16.4 124130 1nm8A 616 54.28 c.43.1.3,c.43.1.3 85872,85873 1ys7A 233 55.17 a.4.6.1,c.23.1.1 123961,123962 1a7cA 379 55.60 e.1.1.1 42660 1vz0A 230 57.82 a.4.14.1,d.268.1.1 108929,108930 1keaA 221 59.57 a.96.1.2 68491 1eaf 243 62.45 3cx5B 352 62.96 1vmaA 306 63.53 a.24.13.1,c.37.1.10 108887,108888 2zcuA 286 63.95 2v3sA 96 64.89 1ofgA 381 66.22 c.2.1.3,d.81.1.5 30064,39979 2vq2A 225 67.50 1olmA 403 67.99 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2gx5A 170 68.12 2pezA 179 69.49 2yzvA 303 70.66 2yvuA 186 71.82 1g4wR 383 72.52 a.24.11.1,c.45.1.2 16644,32692 2exxA 306 73.63 1t5jA 313 74.89 a.209.1.1 99125 2jg1A 330 74.93 3b7nA 320 75.41 1al3 324 76.68 2i71A 400 76.69 2fozA 347 78.08 1fiuA 286 79.37 c.52.1.10 33317 2pn8A 211 80.28 2q0zX 339 81.39 2gvkA 317 82.57 d.58.4.14 135782 2j7uA 635 83.32 2c5qA 240 84.23 1qmvA 197 85.33 c.47.1.10 33066 2dhoA 235 85.42 1h2rL 534 85.93 e.18.1.1 43298 1a04A 215 86.02 a.4.6.2,c.23.1.1 16234,31089 1ri7A 171 86.51 a.4.5.32,d.58.4.2 97504,97505 1bd0A 388 89.01 b.49.2.2,c.1.6.1 26480,28642