# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ia0A	171	12.59		
2dbbA	151	13.55		
1ri7A	171	13.60	a.4.5.32,d.58.4.2	97504,97505
1i1gA	141	13.96	a.4.5.32,d.58.4.2	65982,65983
2cg4A	152	16.26	a.4.5.32,d.58.4.2	130417,130418
1uf2C	421	18.19	a.115.1.3,b.19.1.1	99291,99292
1mh1	186	21.30		
1rz3A	201	22.01	c.37.1.6	98132
2qaiA	111	22.61		
3bwdD	182	23.06		
1ekfA	365	26.36	e.17.1.1	59445
1nf3A	195	27.24	c.37.1.8	85594
1p9bA	442	27.81	c.37.1.10	94385
2p5yA	311	30.37		
1tx4B	178	35.64	c.37.1.8	32045
2ivmA	150	36.53		
1iweA	457	36.60	c.37.1.10	71486
2pfkA	320	37.46	c.89.1.1	35577
2imjA	166	38.44		
2j0vA	212	44.91		
2qz8A	149	44.93		
2cyyA	151	45.86	a.4.5.32,d.58.4.2	131028,131029
2d5rA	252	46.20		
1h5wA	309	46.50	e.27.1.1	65635
1k6kA	143	47.49	a.174.1.1	77274
1gy6A	127	49.48	d.17.4.2	70736
2pzmA	330	50.13		
1nmoA	247	51.03	c.135.1.1	91980
2q3hA	201	54.59		
1r6dA	337	55.82	c.2.1.2	97148
2ozbB	260	59.54		
1ea3A	164	60.31	a.95.1.1	59398
2p4hX	322	61.23		
2fvhA	120	62.16		
2b6hA	192	62.43	c.37.1.8	127994
1mh1A	186	64.29	c.37.1.8	32002
1a3aA	148	65.89	d.112.1.1	40917
1ar0A	127	68.57	d.17.4.2	38092
1o65A	246	68.81	b.58.1.2	92544
2pfuA	99	69.66		
2fywA	267	70.32	c.135.1.1	134408
2atxA	194	71.82	c.37.1.8	127315
1a6f	119	75.63		
1eesA	178	77.91	c.37.1.8	32073
1wqaA	455	78.24		
1aa7A	158	80.85	a.95.1.1	18741
2gm6A	208	81.07		
2pk3A	321	81.18		
2eryA	172	81.40	c.37.1.8	132306
3bu8A	235	82.31		
2aaa	484	84.91		
1qm4A	396	85.64	d.130.1.1,d.130.1.1,d.130.1.1	41350,41351,41352
1whrA	124	85.68	d.68.7.1	114650
2c2hA	192	87.00	c.37.1.8	129668
1bc8C	93	87.64	a.4.5.21	16168
1m7bA	184	88.23	c.37.1.8	74572
1uwkA	557	88.24	e.51.1.1	108065
1vjuA	309	89.52	d.248.1.1	100835