# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ozbB 260 1.798 1lehA 364 2.704 c.2.1.7,c.58.1.1 30268,33916 2cg4A 152 2.929 a.4.5.32,d.58.4.2 130417,130418 2gf3A 389 3.398 c.3.1.2,d.16.1.3 135070,135071 1h5wA 309 3.689 e.27.1.1 65635 2g8mA 264 4.135 2vn6B 64 5.458 2o7oA 207 6.170 a.4.1.9,a.121.1.1 138930,138931 1i1gA 141 8.121 a.4.5.32,d.58.4.2 65982,65983 1nm1G 125 8.141 d.109.1.1 80653 1rpnA 335 9.652 c.2.1.2 97708 1tvlA 454 13.48 c.1.16.4 107366 1yw1A 442 13.70 c.1.16.4 124130 1xw2A 405 17.05 a.102.1.2 122389 2ivmA 150 17.15 2dbbA 151 17.98 2cyyA 151 19.93 a.4.5.32,d.58.4.2 131028,131029 1i9yA 347 20.08 d.151.1.2 62101 3bwxA 285 22.76 1axwA 265 23.13 d.117.1.1 40938 1o3uA 135 26.30 a.24.16.3 86615 2reb 352 26.36 1ri7A 171 27.48 a.4.5.32,d.58.4.2 97504,97505 1qa9A 102 27.87 b.1.1.1 19742 1fieA 731 28.19 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 21879,22167,22168,37109 2ia0A 171 29.68 1mb3A 124 30.03 c.23.1.1 78907 2cfxA 144 30.81 a.4.5.32,d.58.4.2 130395,130396 1f8rA 498 30.97 c.3.1.2,d.16.1.5 30410,37974 1m15A 357 30.99 a.83.1.1,d.128.1.2 78368,78369 2qn6A 414 31.49 1d2tA 231 32.26 a.111.1.1 19052 1bw9A 356 32.45 c.2.1.7,c.58.1.1 30274,33922 1qg3A 195 33.18 b.1.2.1,b.1.2.1 21993,21994 1n7hA 381 33.65 c.2.1.2 80250 1hs6A 611 33.66 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2egvA 229 34.25 2zb9A 214 34.51 1oy3D 282 34.66 d.211.1.1 87554 1sfnA 246 35.41 b.82.1.11 105496 2uvlA 96 36.29 2p5vA 162 37.55 2hfkA 319 38.49 1ekfA 365 38.55 e.17.1.1 59445 2gl6A 392 39.57 2drhA 361 40.03 2qbvA 90 40.04 1p1jA 533 41.40 c.2.1.3,d.81.1.3 87687,87688 2z0hA 197 42.63 1l9cA 389 43.05 c.3.1.2,d.16.1.3 77815,77816 1xp8A 366 43.68 c.37.1.11,d.48.1.1 115735,115736 1r5tA 142 43.82 c.97.1.1 104812 1sgvA 316 45.64 b.122.1.1,d.265.1.2 98858,98859 2a97A 439 47.56 2bexA 460 48.36 c.10.1.1 128398 2hyxA 352 49.03 2i3oA 516 51.98 d.153.1.6 137027 1m5q1 130 54.01 2blcA 238 54.65 1o5oA 221 57.14 c.61.1.1 92509 1ez0A 510 57.22 c.82.1.1 35385 1cviA 342 58.85 c.60.1.2 33989 2ot9A 180 59.35 1gadO 330 60.67 c.2.1.3,d.81.1.1 29950,39865 1nglA 179 62.19 b.60.1.1 27146 2i10A 202 63.12 a.4.1.9,a.121.1.1 136960,136961 2dg7A 195 64.91 1x31B 404 65.60 1xwtA 405 66.38 a.102.1.2 122410 3bf7A 255 68.65 1uf2C 421 68.94 a.115.1.3,b.19.1.1 99291,99292 2bg1A 494 69.86 e.3.1.1 128457 1qpaA 345 73.42 a.93.1.1 18585 1m64A 571 74.30 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1j0hA 588 74.38 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1k8kB 394 74.45 c.55.1.1 68307 2gqqA 163 75.66 1rz3A 201 79.79 c.37.1.6 98132 1byqA 228 80.11 d.122.1.1 41100 2qp2A 511 80.18 1opcA 110 80.45 a.4.6.1 16231 1a35A 538 82.00 d.163.1.2,e.15.1.1 42171,43264 2burB 241 82.51 b.3.6.1 129228 2a7wA 116 85.57 a.204.1.4 126369 1lt3A 240 86.01 d.166.1.1 42230 1u69A 163 86.97 d.32.1.7 107699 1u94A 356 87.61 c.37.1.11,d.48.1.1 107743,107744 1mh1A 186 88.29 c.37.1.8 32002 1whrA 124 89.86 d.68.7.1 114650