# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ekfA	365	6.473	e.17.1.1	59445
1ri7A	171	8.929	a.4.5.32,d.58.4.2	97504,97505
1h5wA	309	11.65	e.27.1.1	65635
1i1gA	141	16.12	a.4.5.32,d.58.4.2	65982,65983
2qz8A	149	19.59		
2cg4A	152	19.83	a.4.5.32,d.58.4.2	130417,130418
2ivmA	150	20.31		
2cyyA	151	21.76	a.4.5.32,d.58.4.2	131028,131029
2ozbB	260	22.56		
2gqqA	163	24.72		
2cviA	83	33.70		
2dbbA	151	36.44		
1nf3A	195	42.22	c.37.1.8	85594
2f2aB	483	43.16	a.182.1.2,d.128.1.5	132802,132803
1uf2C	421	44.95	a.115.1.3,b.19.1.1	99291,99292
1pe1A	267	48.88	c.1.10.4	94591
1whrA	124	48.93	d.68.7.1	114650
1h54A	754	49.27	a.102.1.4,b.30.5.3	60634,60635
2o7oA	207	51.02	a.4.1.9,a.121.1.1	138930,138931
1tvlA	454	53.26	c.1.16.4	107366
2qbvA	90	55.78		
1rz3A	201	56.34	c.37.1.6	98132
2p5vA	162	58.10		
2zb9A	214	61.92		
2ia0A	171	62.67		
2uxuA	210	64.82		
2cfxA	144	65.09	a.4.5.32,d.58.4.2	130395,130396
2d5rA	252	67.10		
1uwzA	136	67.53	c.97.1.1	108081
2imjA	166	68.31		
1u04A	771	68.72	b.34.14.1,c.55.3.10	107539,107540
1oivA	191	68.82	c.37.1.8	93076
1jmvA	141	69.02	c.26.2.4	66897
2jisA	515	70.06		
1rzhL	281	77.59	f.26.1.1	98164
2eryA	172	79.74	c.37.1.8	132306
2p5yA	311	80.97		
3b81A	203	81.48		
1mh1	186	85.23		
1k8kB	394	86.71	c.55.1.1	68307
2qaiA	111	86.75		
1fj2A	232	87.71	c.69.1.14	34720
1jtkA	136	89.92	c.97.1.1	71862