# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1b0uA	262	15.02	c.37.1.12	32370
2ipiA	521	19.81		
3c9pA	123	21.55		
2hy5B	136	22.94	c.114.1.1	136866
1z2aA	168	23.67	c.37.1.8	124374
1ispA	181	28.02	c.69.1.18	76778
1heiA	451	34.72	c.37.1.14,c.37.1.14	32463,32464
1lrzA	426	38.46	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1rzuA	485	44.94	c.87.1.8	105140
1jpyA	137	47.59	g.17.1.6	67065
1pujA	282	52.99	c.37.1.8	88294
2rf5A	258	53.34		
2erxA	172	55.70	c.37.1.8	132304
1xt8A	292	58.47	c.94.1.1	122293
2qx5A	661	64.08		
1wlxA	129	71.04		
1f9mA	112	71.54	c.47.1.1	32736
1tw7A	99	73.80		
1z4hA	66	76.13		
1qg4A	216	81.08	c.37.1.8	32035
1ad2A	228	84.60	e.24.1.1	43353
2gj8A	172	84.69	c.37.1.8	135270
2r76A	152	86.83