# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3cawA	330	7.928		
2rdmA	132	8.060		
1qjcA	158	10.92	c.26.1.3	63328
1uocA	289	11.69	c.55.3.9	99686
1yllA	200	13.80	b.82.1.17	123653
1r8sA	164	17.02	c.37.1.8	97247
2h9uA	102	18.76		
2p8tA	200	20.07		
2cb0A	333	20.11		
1miwA	404	21.34	a.173.1.1,d.218.1.4	79162,79163
2hgsA	474	21.80	c.30.1.4,d.142.1.6	31722,75997
2b5tI	432	22.32	e.1.1.1	127905
2vglB	591	24.94		
1a5t	334	25.07		
3bomA	142	25.63		
1od6A	160	27.25	c.26.1.3	86836
1nrwA	288	31.38	c.108.1.10	86128
2dbhA	102	32.20		
2hdoA	209	32.24	c.108.1.6	136345
1fzqA	181	34.65	c.37.1.8	32060
2guyA	478	34.91	b.71.1.1,c.1.8.1	135754,135755
1dzfA	215	38.75	c.52.3.1,d.78.1.1	33344,39753
1a7j	290	39.29		
1kamA	194	40.81	c.26.1.3	72254
1kshA	186	41.55	c.37.1.8	72914
2b0cA	206	42.30	c.108.1.2	127633
1qd9A	124	44.04	d.79.1.1	39758
1g8lA	411	44.23	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1yv4A	104	46.20		
1kpsB	171	47.87	a.118.12.1	68787
2p51A	333	50.40		
2pozA	392	51.25		
1dceB	331	51.67	a.102.4.3	18872
1wdvA	152	52.09	d.116.1.1	114539
1vjnA	220	52.19	d.157.1.4	100825
2p3hA	101	52.46		
2h8fA	143	54.35	a.1.1.2	136239
1nbuB	119	55.98	d.96.1.3	91768
1jd1A	129	56.71	d.79.1.1	62890
1ykjA	394	57.08		
1wu2A	396	57.98	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886
2pf5A	98	59.38		
1yocA	147	59.54	d.38.1.5	123778
2aaaA	484	60.97	b.71.1.1,c.1.8.1	27777,28764
1dg9A	157	65.03	c.44.1.1	32637
2pgeA	377	65.66		
2grrB	170	66.11		
1o3yA	166	69.92	c.37.1.8	86618
1s3cA	141	72.83		
1xrsB	262	75.09	c.23.6.1,d.230.4.1	115884,115885
2j8aA	136	75.32		
2q9rA	200	76.14		
2jaeA	489	76.65		
2fazA	78	79.38	d.15.1.1	133223
1vh0A	161	80.00	c.116.1.3	100626
2feaA	236	80.25	c.108.1.20	133327
2aa1A	144	80.63	a.1.1.2	126463
1tmyA	120	81.30	c.23.1.1	31083
1sflA	238	82.70	c.1.10.1	112077
1lbu	213	85.37		
1zd9A	188	86.15	c.37.1.8	124938
1o26A	232	87.63	d.207.1.1	86566
1ornA	226	88.61	a.96.1.1	87342
1uptA	171	89.09	c.37.1.8	99767
1ppjD	241	89.14	a.3.1.3,f.23.11.1	104258,104259
1g5tA	196	89.17	c.37.1.11	32366