# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6f	119	7.240		
1uc7A	125	10.14	c.47.1.1	99163
1dazC	99	15.18	b.50.1.1	26501
3c9pA	123	15.29		
2hs1A	99	23.34		
2fxdA	99	27.75		
2h00A	254	28.42	c.66.1.54	135925
1nh0A	99	28.89	b.50.1.1	91869
1z2aA	168	30.24	c.37.1.8	124374
1kzkA	99	32.31	b.50.1.1	73371
1sw2A	275	41.64	c.94.1.1	106064
1khyA	148	42.80	a.174.1.1	77410
2fkkA	206	43.61		
1ispA	181	49.03	c.69.1.18	76778
2yysA	286	51.51		
2fazA	78	54.31	d.15.1.1	133223
1hdhA	536	55.73	c.76.1.2	65805
1z4hA	66	57.15		
1vplA	256	63.10	c.37.1.12	113966
2ac7A	235	66.77	c.56.2.1	126543
1kb9I	55	69.91	f.23.14.1	77324
2jdiA	510	77.04		
1luzA	88	77.92	b.40.4.5	74271
1v1aA	309	79.53	c.72.1.1	100249
2j9jA	99	80.87		
3bu8A	235	84.84		
2c82A	413	87.00		
1ni5A	433	88.37	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533