# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vplA	256	5.407	c.37.1.12	113966
1a6f	119	11.09		
1uc7A	125	14.98	c.47.1.1	99163
1ispA	181	15.04	c.69.1.18	76778
2iyvA	184	21.96	c.37.1.2	137812
1khyA	148	30.30	a.174.1.1	77410
1z2aA	168	33.74	c.37.1.8	124374
3c9pA	123	33.87		
1nh0A	99	37.26	b.50.1.1	91869
1dazC	99	40.25	b.50.1.1	26501
2qjtA	352	41.04		
1ji0A	240	48.23	c.37.1.12	71665
2hs1A	99	57.00		
1z4hA	66	60.43		
1t3kA	152	63.74	c.46.1.1	106357
1c9oA	66	64.64	b.40.4.5	25325
2ac7A	235	69.43	c.56.2.1	126543
1v1aA	309	70.76	c.72.1.1	100249
1kzkA	99	74.92	b.50.1.1	73371