# List of top-scoring protein chains for T0441.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hsgA	332	4.61e-28	a.35.1.5,c.93.1.1	136722,136723
2jcgA	332	5.54e-28		
1jh9A	340	2.49e-27	a.35.1.5,c.93.1.1	66710,66711
2pugA	340	2.73e-27	a.35.1.5,c.93.1.1	17088,35683
1qpzA	340	2.88e-27	a.35.1.5,c.93.1.1	17097,35673
2pucA	340	2.94e-27	a.35.1.5,c.93.1.1	17094,35684
1qqbA	340	3.03e-27	a.35.1.5,c.93.1.1	17099,35674
1jfsA	340	3.19e-27	a.35.1.5,c.93.1.1	66650,66651
1jftA	340	3.38e-27	a.35.1.5,c.93.1.1	66652,66653
1vpwA	340	3.57e-27	a.35.1.5,c.93.1.1	17087,35680
2o20A	332	5.61e-26		
3ctpA	330	1.51e-25		
3bilA	348	4.48e-23		
1jyeA	349	4.70e-22	c.93.1.1	67455
1lbiA	360	4.72e-22	c.93.1.1	35694
1jyfA	349	4.75e-22	c.93.1.1	67456
1efaA	333	4.78e-22	a.35.1.5,c.93.1.1	17106,35691
2pe5A	330	6.41e-22		
2nzuG	280	1.16e-21	c.93.1.1	138854
1dbqA	289	1.23e-21	c.93.1.1	35666
2fepA	289	1.26e-21		
1jhzA	289	1.37e-21	c.93.1.1	66731
3brqA	296	9.79e-20		
3bblA	287	1.91e-19		
2rgyA	290	5.92e-18		
3c3kA	285	8.70e-18		
3clkA	290	2.71e-17		
2qu7A	288	1.66e-16		
1tlfA	301	4.03e-15	c.93.1.1	35687
2p9hA	269	5.49e-15	c.93.1.1	139580
2iksA	293	1.32e-14		
3cs3A	277	1.39e-14		
2h0aA	276	2.20e-14		
2ioyA	283	6.17e-13		
2gx6A	278	2.94e-12		
1dbpA	271	4.42e-12	c.93.1.1	35639
2driA	271	4.71e-12	c.93.1.1	35637
1drjA	271	5.29e-12	c.93.1.1	35642
1ba2A	271	5.62e-12	c.93.1.1	35640
1drkA	271	5.90e-12	c.93.1.1	35638
1bykA	255	2.58e-11	c.93.1.1	35706
2fn9A	290	3.41e-11		
2fn8A	303	3.87e-11		
1gudA	288	4.99e-09	c.93.1.1	83326
2qvcA	313	9.65e-08		
2h3hA	313	1.58e-07		
3c6qA	311	1.93e-07		
2bjcA	62	8.88e-07	a.35.1.5	128620
1cjgA	62	1.46e-06	a.35.1.5	17112
1l1mA	62	1.83e-06	a.35.1.5	73474
1lqcA	56	4.35e-06	a.35.1.5	17109
1pruA	56	5.64e-06	a.35.1.5	17104
3brsA	289	7.73e-06		
2fvyA	309	1.39e-05	c.93.1.1	134227
2hphA	316	1.42e-05	c.93.1.1	136652
2ipnA	318	1.43e-05		
1lccA	51	1.43e-05	a.35.1.5	17110
2ipmA	318	1.78e-05		
2iplA	318	2.12e-05		
2rjoA	332	2.49e-05		
3gbpA	307	2.83e-05	c.93.1.1	35661
1gcaA	309	2.83e-05	c.93.1.1	35659
1uxcA	65	3.53e-05	a.35.1.5	17119
3d02A	303	0.005395		
1abeA	306	0.01482	c.93.1.1	35648
8abpA	306	0.01580	c.93.1.1	35647
1bapA	306	0.01953	c.93.1.1	35654
1tjyA	316	0.03999	c.93.1.1	107062
2fqxA	318	0.05150		
1zhhA	344	0.07444	c.93.1.1	125095
1jx6A	342	0.07468	c.93.1.1	67406
2hj9A	339	0.07492	c.93.1.1	136538
6pfkA	319	1.598	c.89.1.1	35583
4pfkA	319	1.656	c.89.1.1	35582
1mtoA	319	1.743	c.89.1.1	79458
2hqbA	296	3.279		
1p5jA	372	6.777	c.79.1.1	104067
2g7uA	257	9.442		
1pfkA	320	16.24	c.89.1.1	35575
1ku9A	152	16.80	a.4.5.36	77544
2v9dA	343	19.65		
1ewkA	490	22.86	c.93.1.1	35712
2qwtA	196	35.81		
3b7hA	78	38.53		
1tybE	319	39.22	c.26.1.1	31569
1pwhA	327	39.65	c.79.1.1	95224
1zuaX	317	43.49		
1v4rA	102	45.37	a.4.5.6	119835
2gmgA	105	49.76		
1tyaE	319	55.22	c.26.1.1	31570
2jj7A	186	55.53		
2i14A	395	57.06	c.1.17.1,d.41.2.1	136966,136967
1rvv1	154	57.16		
2ictA	94	59.21		
2b0jA	358	59.53	a.100.1.11,c.2.1.6	127639,127640
2fx0A	201	61.04	a.4.1.9,a.121.1.1	134269,134270
2ehhA	294	65.01		
1cqjB	385	67.17	c.23.4.1,d.142.1.4	31143,41564
1wcxA	261	69.74		
2np5A	203	71.52	a.4.1.9,a.121.1.1	138424,138425
2nu8B	388	72.29		
2eq5A	228	73.54		
1uqrA	154	75.63	c.23.13.1	99779
4ts1A	319	78.00	c.26.1.1	31565
1jllB	388	78.45	c.23.4.1,d.142.1.4	66853,66854
1tydE	319	78.76	c.26.1.1	31567
3cpxA	321	81.94		
2ts1A	419	86.22	c.26.1.1	31564
2gy9B	236	87.88		
1qnlA	385	88.85	c.93.1.1	35665
1vs5B	241	88.99		
2qalB	240	89.07