# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 5.44e-27 a.35.1.5,c.93.1.1 66652,66653 1efaA 333 9.29e-27 a.35.1.5,c.93.1.1 17106,35691 1qpzA 340 1.61e-26 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 2.21e-26 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 3.20e-22 2fepA 289 4.12e-22 2iksA 293 1.24e-21 3bblA 287 1.52e-21 3ctpA 330 3.60e-21 2qu7A 288 3.76e-21 3brqA 296 5.29e-21 1dbqA 289 5.36e-21 c.93.1.1 35666 3c3kA 285 5.55e-21 2rgyA 290 6.23e-21 3cs3A 277 1.05e-20 1jyeA 349 3.05e-20 c.93.1.1 67455 3bilA 348 7.95e-20 2h0aA 276 8.16e-20 1tlfA 301 1.04e-19 c.93.1.1 35687 1bykA 255 6.72e-19 c.93.1.1 35706 2driA 271 1.55e-18 c.93.1.1 35637 2ioyA 283 5.08e-18 2dri 271 5.84e-18 2fn9A 290 1.09e-17 1jx6A 342 1.43e-17 c.93.1.1 67406 3clkA 290 4.97e-17 1gudA 288 1.45e-15 c.93.1.1 83326 2h3hA 313 3.46e-15 3brsA 289 1.13e-14 2rjoA 332 1.13e-14 2qvcA 313 1.14e-14 3c6qA 311 1.25e-14 1gca 309 1.17e-13 8abp 306 2.10e-13 2fvyA 309 5.18e-13 c.93.1.1 134227 8abpA 306 1.16e-12 c.93.1.1 35647 3d02A 303 1.91e-12 1tjyA 316 5.20e-12 c.93.1.1 107062 2bjcA 62 4.98e-06 a.35.1.5 128620 1cjgA 62 5.83e-06 a.35.1.5 17112 1lccA 51 4.22e-05 a.35.1.5 17110 2hqbA 296 0.000775 2qh8A 302 0.001594 2fqxA 318 0.001786 1usgA 346 0.01723 c.93.1.1 99864 2liv 344 0.02248 1z15A 344 0.04288 2h4aA 325 0.05104 1jdpA 441 0.05609 c.93.1.1 62906 1peaA 385 0.1031 c.93.1.1 35662 1dp4A 435 0.2385 c.93.1.1 35710 1pea 385 0.2927 1zxxA 319 0.3405 3ckmA 327 0.4558 3pfk 319 0.4992 1ewkA 490 0.7205 c.93.1.1 35712 6pfkA 319 1.231 c.89.1.1 35583 2hmcA 344 1.341 1pfkA 320 1.635 c.89.1.1 35575 2e4uA 555 2.206 2dgdA 223 2.421 2v9dA 343 3.235 1o5kA 306 3.562 c.1.10.1 92504 2vlbA 251 4.549 2pfkA 320 5.020 c.89.1.1 35577 2ebyA 113 5.151 3b7hA 78 6.645 1tv8A 340 8.201 c.1.28.3 107352 1on2A 142 9.081 a.4.5.24,a.76.1.1 87103,87104 2ictA 94 9.362 2d1hA 109 9.881 a.4.5.50 131125 2pqmA 343 10.05 2nu8B 388 10.41 2bnmA 198 10.50 a.35.1.3,b.82.1.10 128835,128836 1h05A 146 10.96 c.23.13.1 76433 3cecA 104 11.35 2ek5A 129 11.45 1fdyA 297 11.57 c.1.10.1 29071 3bwgA 239 11.95 1dhpA 292 12.27 c.1.10.1 29097 2fb2A 340 12.29 2bdqA 224 12.70 2r8wA 332 12.71 1j0aA 325 12.88 c.79.1.1 83871 1hlvA 131 12.94 a.4.1.7,a.4.1.7 65854,65855 2c4wA 176 12.95 2rfgA 297 13.00 2fp4B 395 13.50 c.23.4.1,d.142.1.4 133897,133898 3by6A 126 15.07 2b5aA 77 15.26 a.35.1.3 127882 1utxA 66 15.72 a.35.1.3 108034 1lliA 92 16.33 a.35.1.2 17025 1a6i 217 17.54 2r1jL 68 17.59 1dv1A 449 17.62 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1e2xA 243 17.70 a.4.5.6,a.78.1.1 16113,18443 1z0xA 220 17.99 a.4.1.9,a.121.1.1 124334,124335 2dhqA 146 18.06 c.23.13.1 31382 1p5jA 372 18.20 c.79.1.1 104067 3bs3A 76 18.36 2ehhA 294 18.73 1uqrA 154 18.77 c.23.13.1 99779 2f46A 156 18.80 2scuB 388 18.93 c.23.4.1,d.142.1.4 31141,41562 1hw1A 239 19.06 a.4.5.6,a.78.1.1 16111,18441 2di3A 239 19.50 1reqA 727 20.04 c.1.19.1,c.23.6.1 29620,31247 1vljA 407 20.07 e.22.1.2 108832 2choA 716 20.70 a.246.1.1,c.1.8.10,d.92.2.3 130479,130480,130481 1rrmA 386 20.90 e.22.1.2 105081 1z7wA 322 21.47 c.79.1.1 124674 2db3A 434 22.34 1pdnC 128 22.43 a.4.1.5 16047 1adrA 76 23.01 a.35.1.2 17042 1nal1 297 23.35 1lmb3 92 23.39 1rpxA 230 23.86 c.1.2.2 28536 1r69 69 23.91 2hk9A 275 25.70 2cro 71 25.76 2ajtA 500 26.17 b.43.2.2,c.85.1.2 126894,126895 1vliA 385 26.42 b.85.1.1,c.1.10.6 108830,108831 1c0wA 225 26.94 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1w3iA 293 27.54 c.1.10.1 109152 1y7yA 74 27.71 a.35.1.3 122729 2v03A 303 27.83 1vz0A 230 28.81 a.4.14.1,d.268.1.1 108929,108930 5reqA 727 29.50 c.1.19.1,c.23.6.1 29632,31259 1pwhA 327 30.38 c.79.1.1 95224 1xkyA 301 30.95 c.1.10.1 122094 1b0nA 111 30.96 a.34.1.1,a.35.1.3 17001,17064 1hl2A 297 31.00 c.1.10.1 83581 1r30A 369 31.59 c.1.28.1 96895 1j0dA 341 31.60 c.79.1.1 83902 1i1qB 192 31.65 c.23.16.1 61544 1z7yA 322 34.82 c.79.1.1 124679 1ic8A 194 35.59 a.4.1.1,a.35.1.1 76740,76741 2q3bA 313 35.84 1km4A 247 36.06 c.1.2.3 72740 1he2A 206 36.99 c.2.1.2 60966 1xel 338 37.78 1imjA 210 37.82 c.69.1.23 71246 1y9qA 192 38.98 a.35.1.8,b.82.1.15 116592,116593 1jflA 228 39.04 c.78.2.1,c.78.2.1 71656,71657 1eudB 396 40.32 c.23.4.1,d.142.1.4 31150,41571 2cc0A 195 40.61 c.6.2.3 130209 2ev0A 142 40.79 a.4.5.24,a.76.1.1 132413,132414 1u3eM 174 40.81 d.4.1.3,d.285.1.1 107640,107641 2o7iA 592 41.73 2tct 207 44.43 1b1cA 181 44.93 c.23.5.2 31212 2croA 71 44.98 a.35.1.2 17038 1i7qB 193 45.36 c.23.16.1 61902 1sfxA 109 46.35 a.4.5.50 105505 1tdj 514 46.71 3bqyA 209 48.61 2a6nA 292 49.70 c.1.10.1 126289 3ladA 476 50.36 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2q09A 416 51.02 1wl8A 189 52.88 c.23.16.1 120997 1neqA 74 53.69 a.35.1.2 17063 1r69A 69 54.00 a.35.1.2 17028 1rh9A 373 54.64 c.1.8.3 118773 2ef8A 84 54.90 1f74A 293 56.41 c.1.10.1 29079 1f5tA 121 56.51 a.4.5.24,a.76.1.1 16203,18409 2vprA 207 56.70 2zdrA 349 57.56 1irxA 523 57.79 a.97.1.2,c.26.1.1 71378,71379 2a6lA 292 58.01 c.1.10.1 126285 1j6pA 418 60.41 b.92.1.4,c.1.9.9 77089,77090 2i9uA 439 60.76 2q88A 257 60.81 2i4iA 417 61.98 1o2dA 371 62.92 e.22.1.2 86591 3bhqA 211 63.15 2o7tA 199 63.74 2etvA 346 68.12 c.92.2.4 132372 1q6oA 216 68.96 c.1.2.3 95986 2o7oA 207 69.27 a.4.1.9,a.121.1.1 138930,138931 3ce9A 354 69.66 1t5iA 172 70.18 c.37.1.19 106450 2yx0A 342 70.37 2qq9A 226 70.62 2q02A 272 70.68 2o3fA 111 70.87 3bdiA 207 71.43 2oi8A 216 72.58 2atsA 292 72.78 c.1.10.1 127306 2r91A 286 73.18 2gokA 429 73.59 2r79A 283 73.62 1twiA 434 74.63 b.49.2.3,c.1.6.1 107399,107400 1tezA 474 74.84 a.99.1.1,c.28.1.1 112409,112410 1twdA 256 76.12 c.1.30.1 107397 1ta9A 450 76.28 1fcjA 322 76.33 c.79.1.1 35289 1tufA 434 76.36 b.49.2.3,c.1.6.1 107335,107336 2r8bA 251 76.44 1ad1A 266 76.86 c.1.21.1 29668 1zccA 248 76.87 c.1.18.3 124903 1zx4A 192 77.18 1ve1A 304 78.01 c.79.1.1 120007 1fx7A 230 78.20 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3c2bA 221 78.27 1b0aA 288 78.64 c.2.1.7,c.58.1.2 30286,33934 1ujpA 271 79.53 c.1.2.4 99462 1s8nA 205 79.81 c.23.1.1 105374 1ez1A 392 81.58 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 2eh3A 179 81.90 1c3oB 382 82.13 c.8.3.1,c.23.16.1 30744,31421 2oerA 214 83.22 3ciwA 348 84.33 1y7pA 223 84.98 c.23.1.7,d.58.18.12 122708,122709 2csuA 457 85.08 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cgpA 210 85.65 a.4.5.4,b.82.3.2 16102,28141 2zb9A 214 86.05 2basA 431 87.01 c.1.33.1,d.110.6.2 128244,128245 1x6vA 630 88.54 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3bjbA 207 88.56 1c30B 382 88.99 c.8.3.1,c.23.16.1 30736,31413 2pceA 386 89.04 1vbjA 281 89.19 1xbyA 216 89.60 c.1.2.3 121846 2r7aA 256 89.73