# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.11e-30 a.35.1.5,c.93.1.1 66652,66653 1efaA 333 2.45e-30 a.35.1.5,c.93.1.1 17106,35691 1qpzA 340 5.08e-30 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.07e-29 a.35.1.5,c.93.1.1 17087,35680 3bblA 287 3.35e-25 2fepA 289 3.80e-25 2o20A 332 4.90e-25 2iksA 293 1.71e-24 2rgyA 290 3.44e-24 3cs3A 277 5.20e-24 3brqA 296 5.63e-24 3ctpA 330 9.42e-24 2qu7A 288 9.88e-24 3c3kA 285 1.05e-23 1dbqA 289 1.30e-23 c.93.1.1 35666 1jyeA 349 9.97e-23 c.93.1.1 67455 1tlfA 301 3.80e-22 c.93.1.1 35687 2h0aA 276 4.52e-22 3bilA 348 7.45e-22 1bykA 255 3.77e-21 c.93.1.1 35706 2driA 271 4.27e-21 c.93.1.1 35637 2ioyA 283 1.86e-20 2dri 271 4.75e-20 1jx6A 342 1.22e-19 c.93.1.1 67406 2fn9A 290 1.44e-19 3clkA 290 2.74e-19 1gudA 288 1.81e-17 c.93.1.1 83326 2h3hA 313 7.72e-17 3brsA 289 1.73e-16 2qvcA 313 1.76e-16 3c6qA 311 2.77e-16 2rjoA 332 3.25e-16 1gca 309 7.26e-15 8abp 306 9.18e-15 2fvyA 309 2.04e-14 c.93.1.1 134227 8abpA 306 5.19e-14 c.93.1.1 35647 3d02A 303 7.48e-14 1tjyA 316 2.19e-13 c.93.1.1 107062 2bjcA 62 5.39e-07 a.35.1.5 128620 1cjgA 62 1.54e-06 a.35.1.5 17112 1lccA 51 9.69e-06 a.35.1.5 17110 2hqbA 296 0.000535 2fqxA 318 0.001387 2qh8A 302 0.002192 1usgA 346 0.02944 c.93.1.1 99864 6pfkA 319 0.04428 c.89.1.1 35583 1jdpA 441 0.06135 c.93.1.1 62906 1zxxA 319 0.06817 2liv 344 0.07099 2h4aA 325 0.1002 1pfkA 320 0.1423 c.89.1.1 35575 1peaA 385 0.1552 c.93.1.1 35662 1dp4A 435 0.1669 c.93.1.1 35710 3pfk 319 0.1732 1z15A 344 0.1788 2pfkA 320 0.2392 c.89.1.1 35577 1pea 385 0.2848 2hmcA 344 0.6639 3ckmA 327 0.7988 2v9dA 343 1.058 1ewkA 490 1.354 c.93.1.1 35712 1o5kA 306 2.094 c.1.10.1 92504 2dgdA 223 2.609 2e4uA 555 3.426 2vlbA 251 4.500 2ebyA 113 5.176 1dhpA 292 5.436 c.1.10.1 29097 1fdyA 297 5.938 c.1.10.1 29071 1hv8A 367 6.450 c.37.1.19,c.37.1.19 32405,32406 2r8wA 332 7.006 2pqmA 343 8.225 1hlvA 131 8.617 a.4.1.7,a.4.1.7 65854,65855 2ehhA 294 8.777 1w3iA 293 9.028 c.1.10.1 109152 2ek5A 129 9.452 1on2A 142 9.677 a.4.5.24,a.76.1.1 87103,87104 3cecA 104 9.850 2r91A 286 9.894 3b7hA 78 10.37 1ujpA 271 10.79 c.1.2.4 99462 2rfgA 297 11.56 2d1hA 109 12.30 a.4.5.50 131125 1h05A 146 13.85 c.23.13.1 76433 2b5aA 77 13.91 a.35.1.3 127882 2ictA 94 14.09 2c4wA 176 14.47 1utxA 66 14.52 a.35.1.3 108034 1hl2A 297 14.75 c.1.10.1 83581 1dv1A 449 14.81 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1nal3 297 16.12 1y7pA 223 16.17 c.23.1.7,d.58.18.12 122708,122709 3bs3A 76 16.87 1f74A 293 17.68 c.1.10.1 29079 2nu8B 388 17.89 1tv8A 340 17.94 c.1.28.3 107352 2dztA 248 18.21 1nal1 297 18.97 2di3A 239 18.98 1lliA 92 18.99 a.35.1.2 17025 2bnmA 198 19.47 a.35.1.3,b.82.1.10 128835,128836 2a6nA 292 19.48 c.1.10.1 126289 1xkyA 301 19.82 c.1.10.1 122094 2ekcA 262 20.17 1vz0A 230 20.67 a.4.14.1,d.268.1.1 108929,108930 2a6lA 292 20.70 c.1.10.1 126285 1a6i 217 21.44 1z0xA 220 21.55 a.4.1.9,a.121.1.1 124334,124335 2fp4B 395 22.13 c.23.4.1,d.142.1.4 133897,133898 3by6A 126 22.17 1t5iA 172 22.19 c.37.1.19 106450 1uqrA 154 22.57 c.23.13.1 99779 1pwhA 327 22.95 c.79.1.1 95224 1kfcA 268 23.31 c.1.2.4 77371 1e2xA 243 23.31 a.4.5.6,a.78.1.1 16113,18443 2dhqA 146 23.69 c.23.13.1 31382 3bwgA 239 23.98 2csuA 457 25.12 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2fb2A 340 25.13 2r1jL 68 25.59 1j0aA 325 25.73 c.79.1.1 83871 1pdnC 128 26.51 a.4.1.5 16047 2f46A 156 27.18 3ce9A 354 27.55 1hw1A 239 27.63 a.4.5.6,a.78.1.1 16111,18441 1vljA 407 27.73 e.22.1.2 108832 1p5jA 372 27.80 c.79.1.1 104067 2scuB 388 28.74 c.23.4.1,d.142.1.4 31141,41562 1rrmA 386 28.89 e.22.1.2 105081 2v03A 303 29.92 1lmb3 92 30.51 1adrA 76 31.55 a.35.1.2 17042 2higA 487 31.91 1b0aA 288 32.43 c.2.1.7,c.58.1.2 30286,33934 1y7yA 74 32.74 a.35.1.3 122729 1r69 69 33.75 1qopA 268 34.70 c.1.2.4 28570 1rh9A 373 34.95 c.1.8.3 118773 3d0cA 314 35.99 1b0nA 111 36.12 a.34.1.1,a.35.1.3 17001,17064 1reqA 727 37.07 c.1.19.1,c.23.6.1 29620,31247 2o7iA 592 37.21 1zccA 248 37.37 c.1.18.3 124903 1i1qB 192 37.51 c.23.16.1 61544 1c0wA 225 38.53 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2tct 207 39.40 2o7tA 199 39.77 3b4uA 294 39.92 2i4iA 417 40.07 2bdqA 224 42.12 1sfxA 109 42.61 a.4.5.50 105505 2ev0A 142 44.08 a.4.5.24,a.76.1.1 132413,132414 2cro 71 44.51 2ajtA 500 44.84 b.43.2.2,c.85.1.2 126894,126895 2r8bA 251 45.20 2oqyA 391 45.44 2vprA 207 45.72 2db3A 434 47.43 2hk9A 275 47.63 1ejbA 168 47.75 c.16.1.1 59417 1a04A 215 48.46 a.4.6.2,c.23.1.1 16234,31089 1c3oB 382 48.48 c.8.3.1,c.23.16.1 30744,31421 1i7qB 193 48.51 c.23.16.1 61902 2q3bA 313 48.54 2q88A 257 49.05 2r79A 283 50.08 2atsA 292 50.56 c.1.10.1 127306 1wl8A 189 50.66 c.23.16.1 120997 1geqA 248 50.80 c.1.2.4 28589 2cc0A 195 51.35 c.6.2.3 130209 1a9xB 379 51.36 c.8.3.1,c.23.16.1 30732,31409 1u8tA 129 52.01 c.23.1.1 113192 1dz3A 130 52.11 c.23.1.1 31105 3bqyA 209 52.33 2zb9A 214 52.47 3c2bA 221 53.69 2c2xA 281 54.51 1c30B 382 54.94 c.8.3.1,c.23.16.1 30736,31413 1ic8A 194 55.28 a.4.1.1,a.35.1.1 76740,76741 2igpA 120 56.22 1ta9A 450 56.40 3bdiA 207 56.89 1yixA 265 57.32 c.1.9.12 123371 2yxoA 267 57.56 1o2dA 371 57.72 e.22.1.2 86591 2qipA 165 59.02 1ab6A 125 59.05 c.23.1.1 31054 2a9oA 120 59.10 c.23.1.1 126444 1vliA 385 59.18 b.85.1.1,c.1.10.6 108830,108831 1rrvA 416 59.40 c.87.1.5 105083 1mvoA 136 59.51 c.23.1.1 79513 1eudB 396 60.29 c.23.4.1,d.142.1.4 31150,41571 1rxyA 253 60.98 c.56.2.1 98065 1gu9A 177 61.42 a.152.1.1 65540 2qzjA 136 61.57 1ys7A 233 62.29 a.4.6.1,c.23.1.1 123961,123962 2h9aA 445 62.51 1zgzA 122 64.95 c.23.1.1 125065 1hqkA 154 65.46 c.16.1.1 65902 1vd6A 224 65.69 c.1.18.3 119991 2ef8A 84 67.25 1ab5A 125 68.15 c.23.1.1 31056 2i9uA 439 68.36 1y0yA 353 69.24 b.49.3.1,c.56.5.4 122514,122515 1neqA 74 69.35 a.35.1.2 17063 2r7aA 256 69.83 1z7yA 322 70.28 c.79.1.1 124679 5reqA 727 70.29 c.1.19.1,c.23.6.1 29632,31259 1f5tA 121 70.57 a.4.5.24,a.76.1.1 16203,18409 1b1cA 181 70.61 c.23.5.2 31212 1lbqA 362 70.96 c.92.1.1 77877 3crjA 199 72.61 2f07A 197 73.69 2qcoA 210 74.16 1jbeA 128 74.19 c.23.1.1 62845 2e6fA 314 74.36 1tdj 514 74.37 2o7oA 207 75.14 a.4.1.9,a.121.1.1 138930,138931 3c61A 314 77.89 3bchA 253 78.39 2rekA 199 78.59 2q24A 194 78.61 1r69A 69 80.26 a.35.1.2 17028 2v8hA 474 80.60 1qvtA 194 81.08 a.4.1.9,a.121.1.1 104602,104603 2croA 71 81.46 a.35.1.2 17038 2pcqA 283 81.95 2qv0A 143 81.97 1z7wA 322 82.12 c.79.1.1 124674 2tysA 268 82.46 c.1.2.4 28572 1y9qA 192 82.59 a.35.1.8,b.82.1.15 116592,116593 2qq9A 226 82.68 3chy 128 83.96 1j7lA 264 83.96 d.144.1.6 62697 1ykfA 352 84.28 b.35.1.2,c.2.1.1 24757,29773 1cs0B 382 84.48 c.8.3.1,c.23.16.1 30740,31417 2ojpA 292 85.32 2pkeA 251 85.49 1qorA 327 85.83 b.35.1.2,c.2.1.1 24766,29782 1je0A 236 85.88 c.56.2.1 66581 1u3eM 174 86.20 d.4.1.3,d.285.1.1 107640,107641 1u2wA 122 86.54 a.4.5.5 119487 1x6vA 630 87.87 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 2acoA 173 87.93 1t33A 224 88.25 a.4.1.9,a.121.1.1 106295,106296 2yxbA 161 88.65 1u7pA 164 89.18 c.108.1.17 113095 3cnbA 143 89.93 1ig3A 263 89.94 b.82.6.1,c.100.1.1 62358,62359