# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 3.59e-28 a.35.1.5,c.93.1.1 66652,66653 1efaA 333 3.61e-28 a.35.1.5,c.93.1.1 17106,35691 1qpzA 340 9.58e-28 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.18e-27 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 1.45e-23 2fepA 289 2.51e-23 3bblA 287 8.37e-23 2iksA 293 1.81e-22 2rgyA 290 2.00e-22 1dbqA 289 2.99e-22 c.93.1.1 35666 3brqA 296 5.05e-22 3ctpA 330 5.41e-22 3c3kA 285 6.24e-22 3cs3A 277 8.00e-22 2qu7A 288 2.16e-21 1jyeA 349 5.77e-21 c.93.1.1 67455 3bilA 348 6.01e-21 1tlfA 301 1.63e-20 c.93.1.1 35687 2h0aA 276 2.62e-20 3clkA 290 7.74e-20 1bykA 255 1.06e-19 c.93.1.1 35706 2driA 271 2.61e-19 c.93.1.1 35637 2ioyA 283 3.83e-19 2fn9A 290 5.00e-19 2dri 271 1.41e-18 1jx6A 342 1.34e-17 c.93.1.1 67406 1gudA 288 1.50e-16 c.93.1.1 83326 3brsA 289 1.67e-15 2h3hA 313 2.01e-15 2qvcA 313 2.41e-15 3c6qA 311 2.44e-15 2rjoA 332 1.23e-14 1gca 309 2.10e-14 8abp 306 2.97e-14 2fvyA 309 1.21e-13 c.93.1.1 134227 8abpA 306 1.71e-13 c.93.1.1 35647 3d02A 303 4.74e-13 1tjyA 316 4.06e-12 c.93.1.1 107062 2bjcA 62 1.32e-06 a.35.1.5 128620 1cjgA 62 1.81e-06 a.35.1.5 17112 1lccA 51 2.04e-05 a.35.1.5 17110 2hqbA 296 0.000786 2fqxA 318 0.000938 2qh8A 302 0.001211 1usgA 346 0.01556 c.93.1.1 99864 1z15A 344 0.03181 2liv 344 0.03598 1peaA 385 0.04679 c.93.1.1 35662 1pea 385 0.1005 2h4aA 325 0.1990 1jdpA 441 0.2775 c.93.1.1 62906 1o5kA 306 0.5952 c.1.10.1 92504 1ewkA 490 0.8845 c.93.1.1 35712 6pfkA 319 0.9081 c.89.1.1 35583 2v9dA 343 1.074 1dp4A 435 1.123 c.93.1.1 35710 2e4uA 555 1.542 2dgdA 223 2.750 2vlbA 251 2.759 2pfkA 320 3.308 c.89.1.1 35577 2ebyA 113 3.446 1pfkA 320 3.590 c.89.1.1 35575 3pfk 319 3.601 3b7hA 78 4.181 1zxxA 319 4.191 1dhpA 292 4.546 c.1.10.1 29097 3ckmA 327 4.617 3cecA 104 4.880 1vliA 385 5.014 b.85.1.1,c.1.10.6 108830,108831 2ictA 94 5.916 1wd7A 261 6.672 c.113.1.1 114526 1wl8A 189 8.438 c.23.16.1 120997 1utxA 66 9.227 a.35.1.3 108034 1vljA 407 9.395 e.22.1.2 108832 1xuuA 349 9.591 b.85.1.1,c.1.10.6 116067,116068 2rfgA 297 9.610 2ehhA 294 9.719 2hmcA 344 11.13 2zdrA 349 12.04 2hk9A 275 12.17 1ta9A 450 13.36 2r79A 283 15.53 2ek5A 129 15.92 2f46A 156 15.94 2r8wA 332 16.11 1i1qB 192 16.41 c.23.16.1 61544 1on2A 142 16.52 a.4.5.24,a.76.1.1 87103,87104 2r1jL 68 16.57 2bdqA 224 16.95 3bs3A 76 17.70 2atsA 292 18.30 c.1.10.1 127306 1b0nA 111 19.10 a.34.1.1,a.35.1.3 17001,17064 3ce9A 354 19.26 3by6A 126 19.48 2fp4B 395 19.56 c.23.4.1,d.142.1.4 133897,133898 2qzjA 136 20.14 2b5aA 77 20.81 a.35.1.3 127882 1r30A 369 22.74 c.1.28.1 96895 1nal1 297 22.86 1kfcA 268 22.91 c.1.2.4 77371 1j6pA 418 23.29 b.92.1.4,c.1.9.9 77089,77090 2q88A 257 23.58 1wcwA 261 23.67 1rrmA 386 23.75 e.22.1.2 105081 2bnmA 198 24.07 a.35.1.3,b.82.1.10 128835,128836 1y7yA 74 25.29 a.35.1.3 122729 1l9xA 315 25.64 c.23.16.1 73762 1h05A 146 25.92 c.23.13.1 76433 2eggA 297 25.96 1adrA 76 27.23 a.35.1.2 17042 1i7qB 193 27.85 c.23.16.1 61902 1ab6A 125 28.85 c.23.1.1 31054 2a9oA 120 28.97 c.23.1.1 126444 1f74A 293 29.47 c.1.10.1 29079 2scuB 388 30.27 c.23.4.1,d.142.1.4 31141,41562 2dhqA 146 30.61 c.23.13.1 31382 1xkyA 301 30.64 c.1.10.1 122094 2ahdA 165 32.55 d.159.1.7 126752 2cc0A 195 32.62 c.6.2.3 130209 1xhfA 123 32.64 c.23.1.1 122003 2a6lA 292 32.72 c.1.10.1 126285 2d1hA 109 33.05 a.4.5.50 131125 1fdyA 297 34.13 c.1.10.1 29071 2ywjA 186 34.15 3bwgA 239 35.04 1eudB 396 35.12 c.23.4.1,d.142.1.4 31150,41571 1ny1A 240 35.29 c.6.2.3 86395 1w3iA 293 35.80 c.1.10.1 109152 1vz0A 230 36.17 a.4.14.1,d.268.1.1 108929,108930 1yrrA 382 36.69 b.92.1.5,c.1.9.10 123935,123936 1a6i 217 37.13 1hw1A 239 37.48 a.4.5.6,a.78.1.1 16111,18441 1zgzA 122 37.52 c.23.1.1 125065 1c30B 382 37.57 c.8.3.1,c.23.16.1 30736,31413 1z0xA 220 37.76 a.4.1.9,a.121.1.1 124334,124335 2ef8A 84 37.79 1ab5A 125 38.43 c.23.1.1 31056 2a6nA 292 39.18 c.1.10.1 126289 2pz0A 252 39.83 1jflA 228 40.25 c.78.2.1,c.78.2.1 71656,71657 1mvoA 136 40.37 c.23.1.1 79513 2yxbA 161 40.87 2h9aA 445 40.98 1uqrA 154 41.92 c.23.13.1 99779 2o7iA 592 42.87 1ys7A 233 43.49 a.4.6.1,c.23.1.1 123961,123962 1c3oB 382 43.72 c.8.3.1,c.23.16.1 30744,31421 2di3A 239 44.40 1fyeA 229 45.51 c.23.16.4 31477 1vd6A 224 46.46 c.1.18.3 119991 1z7yA 322 46.88 c.79.1.1 124679 1qdlB 195 47.45 c.23.16.1 31437 2v8hA 474 47.55 1h7eA 245 47.72 c.68.1.13 60717 1z7wA 322 48.18 c.79.1.1 124674 1u8tA 129 48.40 c.23.1.1 113192 1kgsA 225 48.65 a.4.6.1,c.23.1.1 68596,68597 1edzA 320 48.69 c.2.1.7,c.58.1.2 30287,33935 1qkkA 155 51.29 c.23.1.1 31104 2v03A 303 51.63 1gm5A 780 51.76 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 2qv0A 143 52.82 2nu8B 388 53.07 1v71A 323 53.16 c.79.1.1 119859 2o7oA 207 53.27 a.4.1.9,a.121.1.1 138930,138931 2q09A 416 53.63 2c4wA 176 53.77 2vprA 207 55.11 2r7aA 256 56.82 1jr2A 286 56.86 c.113.1.1 67111 1ic8A 194 59.21 a.4.1.1,a.35.1.1 76740,76741 1u0sY 118 59.97 c.23.1.1 107566 1gu9A 177 60.50 a.152.1.1 65540 1zccA 248 60.55 c.1.18.3 124903 3chy 128 61.13 1hlvA 131 62.26 a.4.1.7,a.4.1.7 65854,65855 1a04A 215 62.82 a.4.6.2,c.23.1.1 16234,31089 1cs0B 382 63.11 c.8.3.1,c.23.16.1 30740,31417 1srrA 124 64.14 c.23.1.1 31110 1hl2A 297 65.20 c.1.10.1 83581 1twdA 256 65.43 c.1.30.1 107397 1vizA 240 65.67 c.1.4.1 100784 2scuA 288 65.90 c.2.1.8,c.23.4.1 30303,31131 2etvA 346 66.37 c.92.2.4 132372 1e2xA 243 66.96 a.4.5.6,a.78.1.1 16113,18443 1b1cA 181 67.40 c.23.5.2 31212 1ee9A 320 67.42 c.2.1.7,c.58.1.2 30288,33936 3bqyA 209 68.31 2f48A 555 69.35 c.89.1.1 132915 1a9xB 379 69.88 c.8.3.1,c.23.16.1 30732,31409 1jbeA 128 70.75 c.23.1.1 62845 1c0wA 225 71.61 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1dbwA 126 71.63 c.23.1.1 31095 3cg4A 142 72.06 1bu5A 147 73.37 c.23.5.1 31155 1xwyA 264 73.63 c.1.9.12 122411 2i9uA 439 74.01 1hv8A 367 74.69 c.37.1.19,c.37.1.19 32405,32406 1qopA 268 74.84 c.1.2.4 28570 2o7tA 199 76.26 2hjvA 163 79.26 1ccwA 137 79.64 c.23.6.1 31238 2fbkA 181 80.50 a.4.5.28 133247 2c1iA 431 80.78 c.6.2.3,d.341.1.1 129636,129637 1yixA 265 82.58 c.1.9.12 123371 1nal3 297 84.19 2ev0A 142 84.49 a.4.5.24,a.76.1.1 132413,132414 2gar 212 84.62 1yioA 208 84.98 a.4.6.2,c.23.1.1 123326,123327 2pceA 386 85.65 1o1yA 239 87.48 c.23.16.1 86554 3cfyA 137 87.72 1vzwA 244 88.38 c.1.2.1 120553 1s8nA 205 88.50 c.23.1.1 105374 1mb3A 124 88.52 c.23.1.1 78907