# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1efaA 333 2.66e-21 a.35.1.5,c.93.1.1 17106,35691 1jftA 340 7.14e-21 a.35.1.5,c.93.1.1 66652,66653 1qpzA 340 7.82e-21 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.76e-20 a.35.1.5,c.93.1.1 17087,35680 3bblA 287 8.14e-18 2fepA 289 2.48e-17 2o20A 332 3.14e-17 2rgyA 290 4.92e-17 2iksA 293 7.39e-17 3ctpA 330 1.10e-16 3c3kA 285 1.56e-16 1dbqA 289 1.74e-16 c.93.1.1 35666 2qu7A 288 2.62e-16 3brqA 296 3.04e-16 3cs3A 277 4.35e-16 1jyeA 349 9.25e-16 c.93.1.1 67455 3bilA 348 1.45e-15 2h0aA 276 1.83e-15 1tlfA 301 1.93e-15 c.93.1.1 35687 1bykA 255 1.04e-14 c.93.1.1 35706 2driA 271 1.29e-14 c.93.1.1 35637 2ioyA 283 4.55e-14 2dri 271 5.10e-14 1jx6A 342 5.59e-14 c.93.1.1 67406 2fn9A 290 5.88e-14 3clkA 290 1.04e-13 1gudA 288 2.78e-12 c.93.1.1 83326 2rjoA 332 4.65e-12 3brsA 289 9.01e-12 2h3hA 313 9.90e-12 2qvcA 313 1.22e-11 3c6qA 311 1.57e-11 8abp 306 1.86e-10 1gca 309 1.98e-10 3d02A 303 4.66e-10 2fvyA 309 5.89e-10 c.93.1.1 134227 8abpA 306 5.92e-10 c.93.1.1 35647 1tjyA 316 1.93e-09 c.93.1.1 107062 2bjcA 62 0.000144 a.35.1.5 128620 1cjgA 62 0.000245 a.35.1.5 17112 1lccA 51 0.001047 a.35.1.5 17110 2qh8A 302 0.01155 2hqbA 296 0.02233 2fqxA 318 0.08229 2liv 344 0.1063 1jdpA 441 0.2754 c.93.1.1 62906 1zxxA 319 0.3038 1usgA 346 0.3073 c.93.1.1 99864 6pfkA 319 0.6454 c.89.1.1 35583 1dp4A 435 0.6467 c.93.1.1 35710 3pfk 319 0.6918 1pfkA 320 0.7988 c.89.1.1 35575 1z15A 344 0.8681 2pfkA 320 1.079 c.89.1.1 35577 1peaA 385 1.139 c.93.1.1 35662 1pea 385 2.061 2hmcA 344 3.140 2v9dA 343 4.577 1o5kA 306 4.659 c.1.10.1 92504 2r8wA 332 6.419 2h4aA 325 7.143 1b0aA 288 7.322 c.2.1.7,c.58.1.2 30286,33934 2rfgA 297 8.462 2dgdA 223 8.920 3ckmA 327 9.808 1fdyA 297 12.85 c.1.10.1 29071 2vlbA 251 13.55 1xkyA 301 15.36 c.1.10.1 122094 1hl2A 297 17.20 c.1.10.1 83581 1ewkA 490 18.72 c.93.1.1 35712 3b7hA 78 19.44 2ehhA 294 20.20 2r91A 286 20.92 2bdqA 224 21.51 2v03A 303 22.72 2ebyA 113 23.70 1nal1 297 25.46 1jflA 228 25.70 c.78.2.1,c.78.2.1 71656,71657 1ho1A 242 27.47 c.1.24.1 61097 1f74A 293 27.57 c.1.10.1 29079 1nal3 297 30.52 1e2xA 243 33.34 a.4.5.6,a.78.1.1 16113,18443 1h05A 146 33.75 c.23.13.1 76433 1xx1A 285 34.38 1yixA 265 34.48 c.1.9.12 123371 2d1hA 109 34.71 a.4.5.50 131125 1tv8A 340 34.77 c.1.28.3 107352 1pwhA 327 35.37 c.79.1.1 95224 3cecA 104 35.46 2atsA 292 35.81 c.1.10.1 127306 1i1qB 192 36.06 c.23.16.1 61544 1kfcA 268 36.28 c.1.2.4 77371 2ictA 94 36.72 2z06A 252 37.03 2pceA 386 37.84 2i9uA 439 38.14 1td2A 287 38.71 c.72.1.5 106765 1a6i 217 39.58 1on2A 142 40.38 a.4.5.24,a.76.1.1 87103,87104 2c4wA 176 42.02 2csuA 457 42.48 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1p5jA 372 42.89 c.79.1.1 104067 1lliA 92 43.25 a.35.1.2 17025 2hk9A 275 44.26 1utxA 66 44.87 a.35.1.3 108034 2bnmA 198 45.35 a.35.1.3,b.82.1.10 128835,128836 2fncA 381 45.65 3by6A 126 46.98 3bs3A 76 47.00 2dhqA 146 47.36 c.23.13.1 31382 2c0hA 353 47.70 c.1.8.3 129594 1ujpA 271 47.73 c.1.2.4 99462 1qwnA 1045 47.76 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2scuB 388 48.67 c.23.4.1,d.142.1.4 31141,41562 1ru8A 232 49.50 c.26.2.1 97849 1t56A 216 49.53 a.4.1.9,a.121.1.1 106428,106429 1ydnA 295 49.88 2o7iA 592 50.08 2ek5A 129 50.09 1rrmA 386 51.28 e.22.1.2 105081 2b5aA 77 51.67 a.35.1.3 127882 1ytvA 366 52.39 c.94.1.1 124016 1b1cA 181 52.69 c.23.5.2 31212 2a6nA 292 52.76 c.1.10.1 126289 1lmb3 92 52.94 1o66A 275 53.07 c.1.12.8 92547 1hlvA 131 54.88 a.4.1.7,a.4.1.7 65854,65855 2ojpA 292 55.35 2ow6A 1045 55.44 1uqrA 154 56.91 c.23.13.1 99779 2h9aA 445 57.33 1a04A 215 57.92 a.4.6.2,c.23.1.1 16234,31089 1j0aA 325 58.62 c.79.1.1 83871 1rh9A 373 59.77 c.1.8.3 118773 2q88A 257 60.56 1qopA 268 60.86 c.1.2.4 28570 1m5wA 243 61.45 c.1.24.1 84836 2yxtA 312 62.39 2dztA 248 62.74 2f46A 156 62.93 2nu8B 388 63.31 1i7qB 193 64.12 c.23.16.1 61902 2a6lA 292 65.57 c.1.10.1 126285 2r1jL 68 65.87 2q3bA 313 66.05 1vz0A 230 66.45 a.4.14.1,d.268.1.1 108929,108930 1cqxA 403 66.51 a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1hv8A 367 66.70 c.37.1.19,c.37.1.19 32405,32406 2q02A 272 66.81 1fcjA 322 66.99 c.79.1.1 35289 2nuwA 288 68.04 1wkyA 464 68.34 b.18.1.31,c.1.8.3 120992,120993 1nu5A 370 68.66 c.1.11.2,d.54.1.1 92183,92184 2c2xA 281 68.96 1w3iA 293 69.34 c.1.10.1 109152 2qv0A 143 69.61 2v8hA 474 69.73 1c0wA 225 70.78 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2citA 282 70.92 c.1.8.3 130499 1xel 338 71.53 2db3A 434 71.63 1hqkA 154 72.03 c.16.1.1 65902 2bsxA 253 72.28 c.56.2.1 129128 1rvv1 154 73.47 3c2bA 221 73.95 1vizA 240 74.36 c.1.4.1 100784 1a4iA 301 74.53 c.2.1.7,c.58.1.2 30278,33926 1y7pA 223 74.64 c.23.1.7,d.58.18.12 122708,122709 2dr1A 386 75.76 1auoA 218 75.95 c.69.1.14 34716 1r69 69 76.50 2b4gA 317 78.68 c.1.4.1 127829 1wl8A 189 79.08 c.23.16.1 120997 2cc0A 195 80.18 c.6.2.3 130209 2r79A 283 81.64 1vzwA 244 81.84 c.1.2.1 120553 1twiA 434 82.25 b.49.2.3,c.1.6.1 107399,107400 1ja1A 622 83.37 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1dhpA 292 83.85 c.1.10.1 29097 2di3A 239 84.07 1ub3A 220 84.66 c.1.10.1 88395 1y7yA 74 85.02 a.35.1.3 122729 2tct 207 85.18 2bv9A 290 85.46 c.1.8.3 129242 2ajtA 500 85.56 b.43.2.2,c.85.1.2 126894,126895 1sfxA 109 86.32 a.4.5.50 105505 1z0xA 220 86.57 a.4.1.9,a.121.1.1 124334,124335 1adrA 76 86.66 a.35.1.2 17042 1q7zA 566 86.99 c.1.21.2,c.1.26.1 96090,96091 2f48A 555 87.47 c.89.1.1 132915 1sr9A 644 89.31 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962