# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1efaA 333 4.71e-27 a.35.1.5,c.93.1.1 17106,35691 1jftA 340 5.01e-27 a.35.1.5,c.93.1.1 66652,66653 1qpzA 340 1.25e-26 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.98e-26 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 2.40e-22 2fepA 289 2.41e-22 2iksA 293 7.50e-22 3ctpA 330 9.89e-22 3bblA 287 1.04e-21 2rgyA 290 2.54e-21 1dbqA 289 4.76e-21 c.93.1.1 35666 3c3kA 285 4.83e-21 3brqA 296 7.59e-21 2qu7A 288 7.67e-21 3cs3A 277 1.42e-20 1jyeA 349 1.60e-20 c.93.1.1 67455 3bilA 348 2.43e-20 1tlfA 301 6.09e-20 c.93.1.1 35687 2h0aA 276 3.05e-19 1bykA 255 4.60e-19 c.93.1.1 35706 2driA 271 4.85e-19 c.93.1.1 35637 2dri 271 2.37e-18 2ioyA 283 2.67e-18 1jx6A 342 3.39e-18 c.93.1.1 67406 2fn9A 290 4.38e-18 3clkA 290 7.79e-18 1gudA 288 4.28e-16 c.93.1.1 83326 2h3hA 313 1.60e-15 2qvcA 313 2.00e-15 3brsA 289 2.85e-15 3c6qA 311 3.23e-15 2rjoA 332 3.25e-15 1gca 309 7.54e-14 8abp 306 1.04e-13 2fvyA 309 2.35e-13 c.93.1.1 134227 3d02A 303 5.19e-13 8abpA 306 6.22e-13 c.93.1.1 35647 1tjyA 316 2.51e-12 c.93.1.1 107062 2bjcA 62 1.43e-06 a.35.1.5 128620 1cjgA 62 2.34e-06 a.35.1.5 17112 1lccA 51 1.89e-05 a.35.1.5 17110 2hqbA 296 0.001333 2fqxA 318 0.002330 2qh8A 302 0.004208 1jdpA 441 0.05120 c.93.1.1 62906 1usgA 346 0.06802 c.93.1.1 99864 2h4aA 325 0.1117 1zxxA 319 0.1139 2liv 344 0.1344 3pfk 319 0.2107 1z15A 344 0.2304 6pfkA 319 0.2983 c.89.1.1 35583 1dp4A 435 0.3300 c.93.1.1 35710 1peaA 385 0.3554 c.93.1.1 35662 1pfkA 320 0.3730 c.89.1.1 35575 2pfkA 320 0.6703 c.89.1.1 35577 3ckmA 327 1.117 2hmcA 344 1.143 1pea 385 1.149 1o5kA 306 1.166 c.1.10.1 92504 2v9dA 343 1.576 1ewkA 490 1.690 c.93.1.1 35712 2dgdA 223 2.415 1fdyA 297 3.294 c.1.10.1 29071 3b7hA 78 3.542 2vlbA 251 3.780 2ebyA 113 5.453 1xkyA 301 5.471 c.1.10.1 122094 2r91A 286 5.934 1hl2A 297 6.500 c.1.10.1 83581 2r8wA 332 8.319 2ehhA 294 8.803 2d1hA 109 9.601 a.4.5.50 131125 1f74A 293 10.06 c.1.10.1 29079 2ictA 94 10.18 2fp4B 395 10.39 c.23.4.1,d.142.1.4 133897,133898 2e4uA 555 10.65 2bnmA 198 10.84 a.35.1.3,b.82.1.10 128835,128836 2rfgA 297 11.10 3cecA 104 11.85 2nu8B 388 12.07 1lliA 92 12.25 a.35.1.2 17025 1utxA 66 12.82 a.35.1.3 108034 1e2xA 243 13.43 a.4.5.6,a.78.1.1 16113,18443 1nal1 297 13.45 1lmb3 92 13.47 1h05A 146 13.92 c.23.13.1 76433 1on2A 142 13.94 a.4.5.24,a.76.1.1 87103,87104 2ek5A 129 14.23 3bs3A 76 14.33 1z0xA 220 14.49 a.4.1.9,a.121.1.1 124334,124335 3by6A 126 14.56 2b5aA 77 14.76 a.35.1.3 127882 1jflA 228 14.85 c.78.2.1,c.78.2.1 71656,71657 1hw1A 239 15.40 a.4.5.6,a.78.1.1 16111,18441 3bwgA 239 15.86 2di3A 239 16.60 1pwhA 327 16.81 c.79.1.1 95224 1nal3 297 17.37 1a6i 217 18.16 1hv8A 367 18.77 c.37.1.19,c.37.1.19 32405,32406 1pdnC 128 18.80 a.4.1.5 16047 1kfcA 268 20.20 c.1.2.4 77371 2dhqA 146 20.25 c.23.13.1 31382 2r1jL 68 20.55 2f46A 156 21.71 1hlvA 131 22.82 a.4.1.7,a.4.1.7 65854,65855 1dhpA 292 23.02 c.1.10.1 29097 2scuB 388 23.12 c.23.4.1,d.142.1.4 31141,41562 1r69 69 23.19 1ujpA 271 23.41 c.1.2.4 99462 2h9aA 445 24.48 2bdqA 224 25.80 1vliA 385 26.06 b.85.1.1,c.1.10.6 108830,108831 1p5jA 372 26.64 c.79.1.1 104067 2c4wA 176 27.33 1adrA 76 27.55 a.35.1.2 17042 1y7yA 74 27.62 a.35.1.3 122729 2ef8A 84 28.08 1c0wA 225 28.13 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1yixA 265 28.27 c.1.9.12 123371 1vljA 407 30.12 e.22.1.2 108832 1i1qB 192 30.89 c.23.16.1 61544 1tv8A 340 31.30 c.1.28.3 107352 1w3iA 293 31.31 c.1.10.1 109152 1b0aA 288 32.68 c.2.1.7,c.58.1.2 30286,33934 1vz0A 230 33.11 a.4.14.1,d.268.1.1 108929,108930 2r79A 283 33.36 1sfxA 109 33.64 a.4.5.50 105505 2db3A 434 34.05 1i7qB 193 34.26 c.23.16.1 61902 1eudB 396 34.73 c.23.4.1,d.142.1.4 31150,41571 2dztA 248 34.77 2cro 71 34.83 2pceA 386 35.71 1rrmA 386 36.83 e.22.1.2 105081 3cmgA 667 37.15 2oqyA 391 37.43 2fb2A 340 37.70 1wl8A 189 38.28 c.23.16.1 120997 1reqA 727 38.96 c.1.19.1,c.23.6.1 29620,31247 1u3eM 174 39.30 d.4.1.3,d.285.1.1 107640,107641 2o7iA 592 40.99 1dv1A 449 41.01 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 3bqyA 209 41.42 1uqrA 154 41.46 c.23.13.1 99779 1b0nA 111 42.05 a.34.1.1,a.35.1.3 17001,17064 1y7pA 223 43.55 c.23.1.7,d.58.18.12 122708,122709 2ajtA 500 43.66 b.43.2.2,c.85.1.2 126894,126895 3c61A 314 43.92 1rvv1 154 44.03 2tct 207 44.84 1b1cA 181 44.95 c.23.5.2 31212 2qv0A 143 45.03 1v71A 323 45.81 c.79.1.1 119859 1rh9A 373 46.53 c.1.8.3 118773 1qopA 268 48.45 c.1.2.4 28570 1hqkA 154 48.85 c.16.1.1 65902 1q6oA 216 49.24 c.1.2.3 95986 1ic8A 194 49.38 a.4.1.1,a.35.1.1 76740,76741 5reqA 727 49.54 c.1.19.1,c.23.6.1 29632,31259 2c2xA 281 49.58 1c30B 382 49.92 c.8.3.1,c.23.16.1 30736,31413 2vprA 207 50.34 2ev0A 142 51.37 a.4.5.24,a.76.1.1 132413,132414 2pcqA 283 51.69 1y9qA 192 52.80 a.35.1.8,b.82.1.15 116592,116593 2f48A 555 54.36 c.89.1.1 132915 3ce9A 354 55.92 1tdj 514 56.29 1ta9A 450 56.34 3bdiA 207 56.49 2croA 71 57.36 a.35.1.2 17038 2o7oA 207 58.73 a.4.1.9,a.121.1.1 138930,138931 1c3oB 382 59.74 c.8.3.1,c.23.16.1 30744,31421 3cgxA 242 59.96 1r69A 69 60.00 a.35.1.2 17028 1zccA 248 62.25 c.1.18.3 124903 2pqmA 343 64.19 1vqoN 187 64.23 c.55.4.1 120375 2o3fA 111 64.53 1xwyA 264 64.92 c.1.9.12 122411 1gu9A 177 64.99 a.152.1.1 65540 2e6fA 314 65.15 1j0aA 325 66.14 c.79.1.1 83871 3c2bA 221 66.68 2ojpA 292 68.23 2qzjA 136 69.88 1vzwA 244 70.11 c.1.2.1 120553 1cs0B 382 70.79 c.8.3.1,c.23.16.1 30740,31417 1rpxA 230 71.53 c.1.2.2 28536 2a6nA 292 71.95 c.1.10.1 126289 1a04A 215 74.40 a.4.6.2,c.23.1.1 16234,31089 1a9xB 379 76.16 c.8.3.1,c.23.16.1 30732,31409 1xbyA 216 76.39 c.1.2.3 121846 1o2dA 371 76.70 e.22.1.2 86591 2cc0A 195 77.05 c.6.2.3 130209 2zdrA 349 77.44 2nuwA 288 77.89 2r8bA 251 77.93 1ab6A 125 78.43 c.23.1.1 31054 2id6A 202 79.87 2v8hA 474 79.94 2atsA 292 81.22 c.1.10.1 127306 1irxA 523 81.57 a.97.1.2,c.26.1.1 71378,71379 2ovlA 371 81.84 2hk9A 275 82.04 2cgpA 210 82.77 a.4.5.4,b.82.3.2 16102,28141 2purA 292 83.31 1j7lA 264 85.24 d.144.1.6 62697 3colA 196 85.33 2q3bA 313 85.71 2v03A 303 85.79 2iekA 200 86.88 1jkoC 52 87.07 a.4.1.2 66809 2ekcA 262 87.07 1geqA 248 88.25 c.1.2.4 28589 2qq9A 226 89.01