# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 3.10e-29 a.35.1.5,c.93.1.1 66652,66653 1efaA 333 5.41e-29 a.35.1.5,c.93.1.1 17106,35691 1qpzA 340 1.88e-28 a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 2.01e-28 a.35.1.5,c.93.1.1 17087,35680 2o20A 332 4.49e-24 2fepA 289 5.39e-24 3bblA 287 9.18e-24 2iksA 293 3.44e-23 3ctpA 330 7.18e-23 2rgyA 290 7.84e-23 1dbqA 289 9.14e-23 c.93.1.1 35666 3brqA 296 9.51e-23 3c3kA 285 9.85e-23 2qu7A 288 9.94e-23 3cs3A 277 1.41e-22 1jyeA 349 1.10e-21 c.93.1.1 67455 1tlfA 301 2.64e-21 c.93.1.1 35687 3bilA 348 3.74e-21 2h0aA 276 6.06e-21 3clkA 290 1.41e-20 1bykA 255 3.24e-20 c.93.1.1 35706 2driA 271 5.89e-20 c.93.1.1 35637 2ioyA 283 1.73e-19 2dri 271 2.70e-19 1jx6A 342 3.21e-19 c.93.1.1 67406 2fn9A 290 7.28e-19 1gudA 288 1.74e-16 c.93.1.1 83326 2h3hA 313 3.07e-16 3brsA 289 7.41e-16 2qvcA 313 9.16e-16 2rjoA 332 1.20e-15 3c6qA 311 1.34e-15 1gca 309 1.87e-14 8abp 306 3.84e-14 2fvyA 309 8.33e-14 c.93.1.1 134227 8abpA 306 2.32e-13 c.93.1.1 35647 3d02A 303 4.03e-13 1tjyA 316 1.12e-12 c.93.1.1 107062 2bjcA 62 8.44e-07 a.35.1.5 128620 1cjgA 62 8.97e-07 a.35.1.5 17112 1lccA 51 1.12e-05 a.35.1.5 17110 2hqbA 296 0.001726 2qh8A 302 0.002205 2fqxA 318 0.002331 1usgA 346 0.03857 c.93.1.1 99864 2liv 344 0.08496 1peaA 385 0.1596 c.93.1.1 35662 1jdpA 441 0.1832 c.93.1.1 62906 1z15A 344 0.2020 2h4aA 325 0.2618 1dp4A 435 0.3336 c.93.1.1 35710 1zxxA 319 0.4003 1pea 385 0.4441 3pfk 319 0.4932 6pfkA 319 0.4950 c.89.1.1 35583 2pfkA 320 1.921 c.89.1.1 35577 2dgdA 223 1.935 2hmcA 344 2.230 1pfkA 320 2.334 c.89.1.1 35575 1ewkA 490 2.506 c.93.1.1 35712 3ckmA 327 2.545 1o5kA 306 3.300 c.1.10.1 92504 2v9dA 343 5.169 2e4uA 555 5.577 1on2A 142 5.760 a.4.5.24,a.76.1.1 87103,87104 3b7hA 78 6.160 2ebyA 113 6.191 2vlbA 251 6.749 2d1hA 109 7.555 a.4.5.50 131125 2ictA 94 8.296 3bwgA 239 8.481 3by6A 126 10.41 2fp4B 395 10.49 c.23.4.1,d.142.1.4 133897,133898 2bnmA 198 10.61 a.35.1.3,b.82.1.10 128835,128836 2ek5A 129 10.66 1dhpA 292 11.94 c.1.10.1 29097 1e2xA 243 12.64 a.4.5.6,a.78.1.1 16113,18443 1fdyA 297 13.03 c.1.10.1 29071 1a6i 217 13.26 3cecA 104 14.09 1hlvA 131 14.39 a.4.1.7,a.4.1.7 65854,65855 1z0xA 220 14.40 a.4.1.9,a.121.1.1 124334,124335 1pdnC 128 14.80 a.4.1.5 16047 1hw1A 239 14.99 a.4.5.6,a.78.1.1 16111,18441 2nu8B 388 15.59 1utxA 66 16.21 a.35.1.3 108034 2o7iA 592 16.56 2r8wA 332 16.58 2di3A 239 16.62 2c4wA 176 16.99 1h05A 146 17.15 c.23.13.1 76433 1vliA 385 18.27 b.85.1.1,c.1.10.6 108830,108831 2scuB 388 18.87 c.23.4.1,d.142.1.4 31141,41562 2b5aA 77 20.26 a.35.1.3 127882 3bs3A 76 20.35 1c0wA 225 21.27 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1xkyA 301 21.49 c.1.10.1 122094 1lliA 92 21.61 a.35.1.2 17025 1b1cA 181 21.90 c.23.5.2 31212 1ic8A 194 22.65 a.4.1.1,a.35.1.1 76740,76741 1z7yA 322 23.66 c.79.1.1 124679 2r79A 283 23.83 1lmb3 92 24.34 1nal1 297 24.91 1wl8A 189 25.00 c.23.16.1 120997 1uqrA 154 25.81 c.23.13.1 99779 2rfgA 297 26.01 2dhqA 146 26.06 c.23.13.1 31382 1eudB 396 27.75 c.23.4.1,d.142.1.4 31150,41571 1w3iA 293 27.93 c.1.10.1 109152 2bdqA 224 28.57 2cro 71 29.82 2f46A 156 30.19 2hk9A 275 30.56 2pqmA 343 30.77 1amoA 615 30.93 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1r69 69 31.06 1hl2A 297 31.54 c.1.10.1 83581 1jflA 228 31.76 c.78.2.1,c.78.2.1 71656,71657 1vz0A 230 32.58 a.4.14.1,d.268.1.1 108929,108930 1adrA 76 32.59 a.35.1.2 17042 2r1jL 68 35.27 2vprA 207 35.38 1ta9A 450 35.53 1i1qB 192 36.01 c.23.16.1 61544 2tct 207 36.05 1rh9A 373 36.06 c.1.8.3 118773 2ehhA 294 36.11 1rrmA 386 36.44 e.22.1.2 105081 1sfxA 109 36.89 a.4.5.50 105505 3bqyA 209 38.01 2o7oA 207 38.40 a.4.1.9,a.121.1.1 138930,138931 1i7qB 193 38.72 c.23.16.1 61902 1b0nA 111 39.22 a.34.1.1,a.35.1.3 17001,17064 2ev0A 142 39.73 a.4.5.24,a.76.1.1 132413,132414 1irxA 523 39.97 a.97.1.2,c.26.1.1 71378,71379 1a04A 215 41.09 a.4.6.2,c.23.1.1 16234,31089 1y7yA 74 41.21 a.35.1.3 122729 1dv1A 449 42.01 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1tv8A 340 42.18 c.1.28.3 107352 1vljA 407 42.27 e.22.1.2 108832 3c2bA 221 42.58 1reqA 727 42.87 c.1.19.1,c.23.6.1 29620,31247 1z7wA 322 43.48 c.79.1.1 124674 1hv8A 367 44.36 c.37.1.19,c.37.1.19 32405,32406 2ajtA 500 44.91 b.43.2.2,c.85.1.2 126894,126895 1pwhA 327 46.48 c.79.1.1 95224 2croA 71 48.56 a.35.1.2 17038 1y9qA 192 49.39 a.35.1.8,b.82.1.15 116592,116593 1u3eM 174 49.85 d.4.1.3,d.285.1.1 107640,107641 1p5jA 372 51.94 c.79.1.1 104067 1c30B 382 52.98 c.8.3.1,c.23.16.1 30736,31413 1omp 370 53.20 1y7pA 223 54.11 c.23.1.7,d.58.18.12 122708,122709 1c3oB 382 55.49 c.8.3.1,c.23.16.1 30744,31421 3cwrA 208 55.86 2oi8A 216 58.22 2etvA 346 58.96 c.92.2.4 132372 2gdqA 382 58.97 c.1.11.2,d.54.1.1 135020,135021 3bjbA 207 60.15 5reqA 727 60.17 c.1.19.1,c.23.6.1 29632,31259 3ce9A 354 60.96 2r91A 286 62.31 2v03A 303 62.83 3bdiA 207 63.09 2qq9A 226 64.20 1n2zA 245 64.39 c.92.2.2 79865 2zb9A 214 64.73 2ef8A 84 65.24 1yixA 265 65.96 c.1.9.12 123371 2zdrA 349 66.26 2c2xA 281 66.66 1nvtA 287 67.55 c.2.1.7,c.58.1.5 86270,86271 2v8hA 474 67.64 2r7aA 256 67.99 2a6nA 292 68.63 c.1.10.1 126289 2h9aA 445 69.15 2q88A 257 69.16 1r69A 69 69.61 a.35.1.2 17028 1y0yA 353 69.81 b.49.3.1,c.56.5.4 122514,122515 2a6lA 292 70.31 c.1.10.1 126285 2csuA 457 71.61 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3cmgA 667 71.87 1neqA 74 72.76 a.35.1.2 17063 1v71A 323 73.07 c.79.1.1 119859 1n4aA 252 73.18 c.92.2.2 85317 2oerA 214 73.97 1jkoC 52 74.32 a.4.1.2 66809 1f74A 293 75.00 c.1.10.1 29079 1a9xB 379 75.72 c.8.3.1,c.23.16.1 30732,31409 1b0aA 288 76.17 c.2.1.7,c.58.1.2 30286,33934 2o3fA 111 77.68 1km4A 247 79.22 c.1.2.3 72740 2q3bA 313 79.43 2f07A 197 80.13 1j0dA 341 80.69 c.79.1.1 83902 1ny1A 240 81.59 c.6.2.3 86395 1zx4A 192 81.59 2oqyA 391 82.50 2o7tA 199 82.51 1gu9A 177 83.61 a.152.1.1 65540 1nal3 297 84.27 2hkuA 215 84.46 1dqrA 557 85.40 c.80.1.2 35305 1o2dA 371 85.98 e.22.1.2 86591 2i9uA 439 86.56 1ja1A 622 87.17 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 3bhqA 211 87.66 2dtrA 226 87.68 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3crjA 199 88.16 1zccA 248 88.26 c.1.18.3 124903 1f5tA 121 88.40 a.4.5.24,a.76.1.1 16203,18409 2atsA 292 89.38 c.1.10.1 127306 1ez1A 392 89.50 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500