# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jftA 340 1.33e-35 a.35.1.5,c.93.1.1 66652,66653 1efaA 333 2.18e-35 a.35.1.5,c.93.1.1 17106,35691 1vpwA 340 6.00e-35 a.35.1.5,c.93.1.1 17087,35680 1qpzA 340 8.84e-35 a.35.1.5,c.93.1.1 17097,35673 2o20A 332 2.57e-29 2fepA 289 7.12e-29 3bblA 287 9.47e-29 2rgyA 290 4.41e-28 2iksA 293 4.52e-28 3ctpA 330 6.35e-28 3c3kA 285 1.62e-27 2qu7A 288 2.16e-27 3cs3A 277 2.21e-27 3brqA 296 2.61e-27 1dbqA 289 3.73e-27 c.93.1.1 35666 1jyeA 349 3.78e-26 c.93.1.1 67455 1tlfA 301 8.24e-26 c.93.1.1 35687 3bilA 348 8.44e-26 2h0aA 276 1.12e-25 2driA 271 3.97e-24 c.93.1.1 35637 3clkA 290 6.21e-24 2ioyA 283 1.12e-23 1bykA 255 1.29e-23 c.93.1.1 35706 2fn9A 290 2.52e-23 2dri 271 8.04e-23 1jx6A 342 3.95e-22 c.93.1.1 67406 1gudA 288 3.74e-20 c.93.1.1 83326 3c6qA 311 2.27e-19 2h3hA 313 2.63e-19 3brsA 289 7.09e-19 2qvcA 313 1.18e-18 2rjoA 332 5.58e-18 8abp 306 1.60e-17 1gca 309 2.89e-17 8abpA 306 1.03e-16 c.93.1.1 35647 2fvyA 309 2.64e-16 c.93.1.1 134227 3d02A 303 8.92e-16 1tjyA 316 6.18e-15 c.93.1.1 107062 2bjcA 62 2.01e-07 a.35.1.5 128620 1cjgA 62 4.08e-07 a.35.1.5 17112 1lccA 51 7.38e-06 a.35.1.5 17110 2hqbA 296 3.37e-05 2fqxA 318 4.34e-05 2qh8A 302 0.000201 1usgA 346 0.003262 c.93.1.1 99864 2h4aA 325 0.02634 2liv 344 0.03837 1peaA 385 0.05394 c.93.1.1 35662 1z15A 344 0.05830 1pea 385 0.08071 1jdpA 441 0.1343 c.93.1.1 62906 1dp4A 435 0.2739 c.93.1.1 35710 1ewkA 490 0.3632 c.93.1.1 35712 2dgdA 223 0.3929 3ckmA 327 0.4112 2vlbA 251 0.4173 2e4uA 555 1.096 2v9dA 343 1.572 2hmcA 344 1.809 2hk9A 275 1.976 2f46A 156 3.862 1j6pA 418 6.303 b.92.1.4,c.1.9.9 77089,77090 2eggA 297 6.848 3b7hA 78 9.110 2v8hA 474 10.28 1nvtA 287 10.41 c.2.1.7,c.58.1.5 86270,86271 1vljA 407 12.62 e.22.1.2 108832 1o5kA 306 13.63 c.1.10.1 92504 2r91A 286 13.65 1ny1A 240 14.64 c.6.2.3 86395 2pfkA 320 14.65 c.89.1.1 35577 1fdyA 297 14.74 c.1.10.1 29071 2ebyA 113 15.54 1xuuA 349 15.84 b.85.1.1,c.1.10.6 116067,116068 2bdqA 224 16.48 2zdrA 349 17.17 3ce9A 354 17.52 1wl8A 189 18.58 c.23.16.1 120997 1gm5A 780 19.72 a.24.21.1,b.40.4.9,c.37.1.19,c.37.1.19 65298,65299,65300,65301 1p1mA 406 19.79 b.92.1.4,c.1.9.9 87696,87697 2c4wA 176 21.33 2dorA 311 22.32 c.1.4.1 28593 2ek5A 129 22.92 1j0dA 341 23.22 c.79.1.1 83902 1pfkA 320 23.23 c.89.1.1 35575 1nal1 297 24.60 1utxA 66 25.46 a.35.1.3 108034 1wpgA 994 26.12 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 6pfkA 319 26.20 c.89.1.1 35583 1s8nA 205 26.52 c.23.1.1 105374 1ta9A 450 28.25 1i1qB 192 29.59 c.23.16.1 61544 3cecA 104 29.62 2rfgA 297 31.56 1o1yA 239 31.72 c.23.16.1 86554 1dhpA 292 31.95 c.1.10.1 29097 1on2A 142 32.41 a.4.5.24,a.76.1.1 87103,87104 1uqrA 154 32.92 c.23.13.1 99779 2ictA 94 34.58 3pga1 337 35.30 1h05A 146 35.87 c.23.13.1 76433 1vizA 240 37.34 c.1.4.1 100784 1y7yA 74 37.74 a.35.1.3 122729 1irxA 523 37.90 a.97.1.2,c.26.1.1 71378,71379 1v71A 323 38.19 c.79.1.1 119859 3ladA 476 39.10 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 4pgaA 337 40.80 c.88.1.1 35565 2o7iA 592 41.23 1zcoA 262 41.85 2fr1A 486 43.16 c.2.1.2,c.2.1.2 133961,133962 1ic8A 194 43.20 a.4.1.1,a.35.1.1 76740,76741 1f2dA 341 43.34 c.79.1.1 35298 2r79A 283 43.35 2dhqA 146 44.03 c.23.13.1 31382 2j13A 247 45.02 c.6.2.3 137934 1he2A 206 45.83 c.2.1.2 60966 1kq3A 376 46.81 e.22.1.2 68790 2nu8B 388 47.38 2oq2A 261 48.30 2b5aA 77 48.55 a.35.1.3 127882 1w3iA 293 49.11 c.1.10.1 109152 2yquA 455 50.94 1ab6A 125 51.02 c.23.1.1 31054 2pz0A 252 51.64 1tib 269 52.73 2v25A 259 53.94 1r30A 369 54.58 c.1.28.1 96895 2ahdA 165 55.22 d.159.1.7 126752 1wohA 305 56.73 c.42.1.1 109446 1hl2A 297 58.03 c.1.10.1 83581 1e2xA 243 59.35 a.4.5.6,a.78.1.1 16113,18443 1rrvA 416 59.89 c.87.1.5 105083 1vliA 385 60.44 b.85.1.1,c.1.10.6 108830,108831 1tibA 269 61.15 c.69.1.17 34738 2q09A 416 62.47 1u8tA 129 62.58 c.23.1.1 113192 1xkyA 301 63.93 c.1.10.1 122094 2bnmA 198 64.00 a.35.1.3,b.82.1.10 128835,128836 2d1hA 109 64.27 a.4.5.50 131125 3ch0A 272 64.56 1s1mA 545 64.61 c.23.16.1,c.37.1.10 105201,105202 2r1jL 68 66.78 2ef8A 84 67.39 1b1cA 181 67.92 c.23.5.2 31212 1vd6A 224 68.06 c.1.18.3 119991 1b0nA 111 68.21 a.34.1.1,a.35.1.3 17001,17064 2px6A 316 68.33 1npdA 288 68.71 c.2.1.7,c.58.1.5 80681,80682 2fp4B 395 69.26 c.23.4.1,d.142.1.4 133897,133898 1ys7A 233 69.68 a.4.6.1,c.23.1.1 123961,123962 2r8wA 332 69.73 1o7jA 327 70.75 c.88.1.1 81140 1t8qA 336 71.03 c.1.18.3 106669 1edoA 244 71.25 c.2.1.2 29896 1gtzA 156 73.19 c.23.13.1 70539 2a0mA 316 74.32 c.42.1.1 125960 1lhpA 312 75.06 c.72.1.5 77960 2r7aA 256 75.26 2etvA 346 76.20 c.92.2.4 132372 1zccA 248 77.00 c.1.18.3 124903 2b82A 211 77.92 c.108.1.12 128057 2ehhA 294 78.01 1q7rA 219 78.40 c.23.16.1 96054 2qmqA 286 78.92 1jbeA 128 78.97 c.23.1.1 62845 1hv8A 367 79.35 c.37.1.19,c.37.1.19 32405,32406 3bs3A 76 79.77 1adrA 76 80.28 a.35.1.2 17042 1ab5A 125 81.71 c.23.1.1 31056 2a35A 215 81.88 c.2.1.2 126072 2di3A 239 82.55 1hlvA 131 84.86 a.4.1.7,a.4.1.7 65854,65855 1lmb3 92 85.35 1hw1A 239 86.28 a.4.5.6,a.78.1.1 16111,18441 1ihoA 283 87.29 c.26.1.4 62390 1km4A 247 87.42 c.1.2.3 72740 1c0wA 225 87.55 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 1n2eA 300 88.29 c.26.1.4 85268